Literature DB >> 26197978

Pathogenic CWF19L1 variants as a novel cause of autosomal recessive cerebellar ataxia and atrophy.

Minh Nguyen1,2, Iris Boesten1, Debby M E I Hellebrekers1, Jo Vanoevelen1, Rick Kamps1, Bart de Koning1, Irenaeus F M de Coo3, Mike Gerards1,2,4, Hubert J M Smeets1,2.   

Abstract

Autosomal recessive cerebellar ataxia (ARCA) is a group of neurological disorders characterized by degeneration or abnormal development of the cerebellum and spinal cord. ARCA is clinically and genetically highly heterogeneous, with over 20 genes involved. Exome sequencing of a girl with ARCA from non-consanguineous Dutch parents revealed two pathogenic variants c.37G>C; p.D13H and c.946A>T; p.K316* in CWF19L1, a gene with an unknown function, recently reported to cause ARCA in a Turkish family. Sanger sequencing showed that the c.37G>C variant was inherited from the father and the c.946A>T variant from the mother. Pathogenicity was based on the damaging effect on protein function as the c.37G>C variant changed the highly conserved, negatively charged aspartic acid to the positively charged histidine and the c.946A>T variant introduced a premature stop codon. In addition, 27 patients with ARCA were tested for pathogenic variants in CWF19L1, however, no pathogenic variants were identified. Our data confirm CWF19L1 as a novel but rare gene causing ARCA.

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Year:  2015        PMID: 26197978      PMCID: PMC4929877          DOI: 10.1038/ejhg.2015.158

Source DB:  PubMed          Journal:  Eur J Hum Genet        ISSN: 1018-4813            Impact factor:   4.246


  10 in total

1.  Homozygous splice mutation in CWF19L1 in a Turkish family with recessive ataxia syndrome.

Authors:  Randi Burns; Karen Majczenko; Jishu Xu; Weiping Peng; Zuhal Yapici; James J Dowling; Jun Z Li; Margit Burmeister
Journal:  Neurology       Date:  2014-10-31       Impact factor: 9.910

Review 2.  Recent advances in the genetics of cerebellar ataxias.

Authors:  Anna Sailer; Henry Houlden
Journal:  Curr Neurol Neurosci Rep       Date:  2012-06       Impact factor: 5.081

3.  The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data.

Authors:  Aaron McKenna; Matthew Hanna; Eric Banks; Andrey Sivachenko; Kristian Cibulskis; Andrew Kernytsky; Kiran Garimella; David Altshuler; Stacey Gabriel; Mark Daly; Mark A DePristo
Journal:  Genome Res       Date:  2010-07-19       Impact factor: 9.043

Review 4.  The autosomal recessive cerebellar ataxias.

Authors:  Mathieu Anheim; Christine Tranchant; Michel Koenig
Journal:  N Engl J Med       Date:  2012-02-16       Impact factor: 91.245

5.  A novel syndrome of Klippel-Feil anomaly, myopathy, and characteristic facies is linked to a null mutation in MYO18B.

Authors:  Anas M Alazami; Amal Y Kentab; Eissa Faqeih; Jawahir Y Mohamed; Hisham Alkhalidi; Hadia Hijazi; Fowzan S Alkuraya
Journal:  J Med Genet       Date:  2015-03-06       Impact factor: 6.318

6.  MYO18B, a candidate tumor suppressor gene at chromosome 22q12.1, deleted, mutated, and methylated in human lung cancer.

Authors:  Michiho Nishioka; Takashi Kohno; Masachika Tani; Nozomu Yanaihara; Yoshio Tomizawa; Ayaka Otsuka; Shigeru Sasaki; Keiko Kobayashi; Toshiro Niki; Arafumi Maeshima; Yoshitaka Sekido; John D Minna; Saburo Sone; Jun Yokota
Journal:  Proc Natl Acad Sci U S A       Date:  2002-09-03       Impact factor: 11.205

7.  dbNSFP v2.0: a database of human non-synonymous SNVs and their functional predictions and annotations.

Authors:  Xiaoming Liu; Xueqiu Jian; Eric Boerwinkle
Journal:  Hum Mutat       Date:  2013-07-10       Impact factor: 4.878

8.  A framework for variation discovery and genotyping using next-generation DNA sequencing data.

Authors:  Mark A DePristo; Eric Banks; Ryan Poplin; Kiran V Garimella; Jared R Maguire; Christopher Hartl; Anthony A Philippakis; Guillermo del Angel; Manuel A Rivas; Matt Hanna; Aaron McKenna; Tim J Fennell; Andrew M Kernytsky; Andrey Y Sivachenko; Kristian Cibulskis; Stacey B Gabriel; David Altshuler; Mark J Daly
Journal:  Nat Genet       Date:  2011-04-10       Impact factor: 38.330

9.  Fast and accurate short read alignment with Burrows-Wheeler transform.

Authors:  Heng Li; Richard Durbin
Journal:  Bioinformatics       Date:  2009-05-18       Impact factor: 6.937

10.  Fast and accurate long-read alignment with Burrows-Wheeler transform.

Authors:  Heng Li; Richard Durbin
Journal:  Bioinformatics       Date:  2010-01-15       Impact factor: 6.937

  10 in total
  6 in total

1.  Clinical Relevance of Noncoding Adenosine-to-Inosine RNA Editing in Multiple Human Cancers.

Authors:  Tongjun Gu; Audrey Q Fu; Michael J Bolt; Kevin P White
Journal:  JCO Clin Cancer Inform       Date:  2019-06

2.  Novel candidate genes and variants underlying autosomal recessive neurodevelopmental disorders with intellectual disability.

Authors:  Regie Lyn P Santos-Cortez; Valeed Khan; Falak Sher Khan; Zaib-Un-Nisa Mughal; Imen Chakchouk; Kwanghyuk Lee; Memoona Rasheed; Rifat Hamza; Anushree Acharya; Ehsan Ullah; Muhammad Arif Nadeem Saqib; Izoduwa Abbe; Ghazanfar Ali; Muhammad Jawad Hassan; Saadullah Khan; Zahid Azeem; Irfan Ullah; Michael J Bamshad; Deborah A Nickerson; Isabelle Schrauwen; Wasim Ahmad; Muhammad Ansar; Suzanne M Leal
Journal:  Hum Genet       Date:  2018-08-22       Impact factor: 4.132

3.  Pathogenic SLIRP variants as a novel cause of autosomal recessive mitochondrial encephalomyopathy with complex I and IV deficiency.

Authors:  Hubert J M Smeets; Mike Gerards; Le Guo; Bob P H Engelen; Irene M G M Hemel; Irenaeus F M de Coo; Maaike Vreeburg; Suzanne C E H Sallevelt; Debby M E I Hellebrekers; Ed H Jacobs; Farah Sadeghi-Niaraki; Florence H J van Tienen
Journal:  Eur J Hum Genet       Date:  2021-08-23       Impact factor: 4.246

Review 4.  Systematic review of autosomal recessive ataxias and proposal for a classification.

Authors:  Marie Beaudin; Christopher J Klein; Guy A Rouleau; Nicolas Dupré
Journal:  Cerebellum Ataxias       Date:  2017-02-23

5.  Purkinje Cell Degeneration and Motor Coordination Deficits in a New Mouse Model of Autosomal Recessive Spastic Ataxia of Charlevoix-Saguenay.

Authors:  Man Ding; Chao Weng; Shanghua Fan; Qian Cao; Zuneng Lu
Journal:  Front Mol Neurosci       Date:  2017-05-01       Impact factor: 5.639

Review 6.  The Classification of Autosomal Recessive Cerebellar Ataxias: a Consensus Statement from the Society for Research on the Cerebellum and Ataxias Task Force.

Authors:  Marie Beaudin; Antoni Matilla-Dueñas; Bing-Weng Soong; Jose Luiz Pedroso; Orlando G Barsottini; Hiroshi Mitoma; Shoji Tsuji; Jeremy D Schmahmann; Mario Manto; Guy A Rouleau; Christopher Klein; Nicolas Dupre
Journal:  Cerebellum       Date:  2019-12       Impact factor: 3.847

  6 in total

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