Literature DB >> 26197144

Examining the Mechanical Equilibrium of Microscopic Stresses in Molecular Simulations.

Alejandro Torres-Sánchez1, Juan M Vanegas1, Marino Arroyo1.   

Abstract

The microscopic stress field provides a unique connection between atomistic simulations and mechanics at the nanoscale. However, its definition remains ambiguous. Rather than a mere theoretical preoccupation, we show that this fact acutely manifests itself in local stress calculations of defective graphene, lipid bilayers, and fibrous proteins. We find that popular definitions of the microscopic stress violate the continuum statements of mechanical equilibrium, and we propose an unambiguous and physically sound definition.

Entities:  

Year:  2015        PMID: 26197144     DOI: 10.1103/PhysRevLett.114.258102

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  10 in total

1.  Nonequilibrium all-atom molecular dynamics simulation of the bubble cavitation and application to dissociate amyloid fibrils.

Authors:  Man Hoang Viet; Philippe Derreumaux; Phuong H Nguyen
Journal:  J Chem Phys       Date:  2016-11-07       Impact factor: 3.488

2.  The aliphatic chain of cholesterol modulates bilayer interleaflet coupling and domain registration.

Authors:  Xubo Lin; Siya Zhang; Hui Ding; Ilya Levental; Alemayehu A Gorfe
Journal:  FEBS Lett       Date:  2016-09-22       Impact factor: 4.124

3.  Simulation Best Practices for Lipid Membranes [Article v1.0].

Authors:  David J Smith; Jeffery B Klauda; Alexander J Sodt
Journal:  Living J Comput Mol Sci       Date:  2019-01-09

4.  Maximally asymmetric transbilayer distribution of anionic lipids alters the structure and interaction with lipids of an amyloidogenic protein dimer bound to the membrane surface.

Authors:  Sara Y Cheng; George Chou; Creighton Buie; Mark W Vaughn; Campbell Compton; Kwan H Cheng
Journal:  Chem Phys Lipids       Date:  2016-01-28       Impact factor: 3.329

5.  Curvature-Regulated Lipid Membrane Softening of Nano-Vesicles.

Authors:  Choon-Peng Chng; Yoel Sadovsky; K Jimmy Hsia; Changjin Huang
Journal:  Extreme Mech Lett       Date:  2021-01-09

6.  Bilayer-Mediated Structural Transitions Control Mechanosensitivity of the TREK-2 K2P Channel.

Authors:  Prafulla Aryal; Viwan Jarerattanachat; Michael V Clausen; Marcus Schewe; Conor McClenaghan; Liam Argent; Linus J Conrad; Yin Y Dong; Ashley C W Pike; Elisabeth P Carpenter; Thomas Baukrowitz; Mark S P Sansom; Stephen J Tucker
Journal:  Structure       Date:  2017-04-06       Impact factor: 5.006

7.  Interaction of Antimicrobial Lipopeptides with Bacterial Lipid Bilayers.

Authors:  Ganesh Shahane; Wei Ding; Michail Palaiokostas; Helena S Azevedo; Mario Orsi
Journal:  J Membr Biol       Date:  2019-05-16       Impact factor: 1.843

8.  Engineering the mechanical properties of CNT/PEEK nanocomposites.

Authors:  Bo Wang; Ke Zhang; Caihua Zhou; Mingfa Ren; Yuantong Gu; Tong Li
Journal:  RSC Adv       Date:  2019-04-25       Impact factor: 4.036

9.  Bacterial Membranes Are More Perturbed by the Asymmetric Versus Symmetric Loading of Amphiphilic Molecules.

Authors:  W F Drew Bennett; Stephen J Fox; Delin Sun; C Mark Maupin
Journal:  Membranes (Basel)       Date:  2022-03-22

10.  Mechanical evolution of DNA double-strand breaks in the nucleosome.

Authors:  Fabrizio Cleri; Fabio Landuzzi; Ralf Blossey
Journal:  PLoS Comput Biol       Date:  2018-06-14       Impact factor: 4.475

  10 in total

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