Literature DB >> 26196256

Accurate ab initio calculations of O-HO and O-H(-)O proton chemical shifts: towards elucidation of the nature of the hydrogen bond and prediction of hydrogen bond distances.

Michael G Siskos1, Andreas G Tzakos, Ioannis P Gerothanassis.   

Abstract

The inability to determine precisely the location of labile protons in X-ray molecular structures has been a key barrier to progress in many areas of molecular sciences. We report an approach for predicting hydrogen bond distances beyond the limits of X-ray crystallography based on accurate ab initio calculations of O-HO proton chemical shifts, using a combination of DFT and contactor-like polarizable continuum model (PCM). Very good linear correlation between experimental and computed (at the GIAO/B3LYP/6-311++G(2d,p) level of theory) chemical shifts were obtained with a large set of 43 compounds in CHCl3 exhibiting intramolecular O-HO and intermolecular and intramolecular ionic O-H(-)O hydrogen bonds. The calculated OH chemical shifts exhibit a strong linear dependence on the computed (O)HO hydrogen bond length, in the region of 1.24 to 1.85 Å, of -19.8 ppm Å(-1) and -20.49 ppm Å(-1) with optimization of the structures at the M06-2X/6-31+G(d) and B3LYP/6-31+G(d) level of theory, respectively. A Natural Bond Orbitals (NBO) analysis demonstrates a very good linear correlation between the calculated (1)H chemical shifts and (i) the second-order perturbation stabilization energies, corresponding to charge transfer between the oxygen lone pairs and σ antibonding orbital and (ii) Wiberg bond order of the O-HO and O-H(-)O hydrogen bond. Accurate ab initio calculations of O-HO and O-H(-)O (1)H chemical shifts can provide improved structural and electronic description of hydrogen bonding and a highly accurate measure of distances of short and strong hydrogen bonds.

Entities:  

Year:  2015        PMID: 26196256     DOI: 10.1039/c5ob00920k

Source DB:  PubMed          Journal:  Org Biomol Chem        ISSN: 1477-0520            Impact factor:   3.876


  12 in total

Review 1.  High Resolution NMR Spectroscopy as a Structural and Analytical Tool for Unsaturated Lipids in Solution.

Authors:  Eleni Alexandri; Raheel Ahmed; Hina Siddiqui; Muhammad I Choudhary; Constantinos G Tsiafoulis; Ioannis P Gerothanassis
Journal:  Molecules       Date:  2017-10-05       Impact factor: 4.411

2.  NMR 1H-Shielding Constants of Hydrogen-Bond Donor Reflect Manifestation of the Pauli Principle.

Authors:  M Natalia C Zarycz; Célia Fonseca Guerra
Journal:  J Phys Chem Lett       Date:  2018-06-25       Impact factor: 6.475

3.  Energy of Intramolecular Hydrogen Bonding in ortho-Hydroxybenzaldehydes, Phenones and Quinones. Transfer of Aromaticity from ipso-Benzene Ring to the Enol System(s).

Authors:  Danuta Rusinska-Roszak
Journal:  Molecules       Date:  2017-03-18       Impact factor: 4.411

Review 4.  Hydrogen Atomic Positions of O-H···O Hydrogen Bonds in Solution and in the Solid State: The Synergy of Quantum Chemical Calculations with ¹H-NMR Chemical Shifts and X-ray Diffraction Methods.

Authors:  Michael G Siskos; M Iqbal Choudhary; Ioannis P Gerothanassis
Journal:  Molecules       Date:  2017-03-07       Impact factor: 4.411

Review 5.  NMR and IR Investigations of Strong Intramolecular Hydrogen Bonds.

Authors:  Poul Erik Hansen; Jens Spanget-Larsen
Journal:  Molecules       Date:  2017-03-29       Impact factor: 4.411

6.  Crystal structure and Hirshfeld surface analysis of 2-hy-droxy-7-meth-oxy-1,8-bis-(2,4,6-tri-chloro-benzo-yl)naphthalene.

Authors:  Toyokazu Muto; Kikuko Iida; Keiichi Noguchi; Noriyuki Yonezawa; Akiko Okamoto
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2019-09-10

7.  Towards Elucidating Structure-Spectra Relationships in Rhamnogalacturonan II: Computational Protocols for Accurate 13C and 1H Shifts for Apiose and Its Borate Esters.

Authors:  Vivek S Bharadwaj; Luke P Westawker; Michael F Crowley
Journal:  Front Mol Biosci       Date:  2022-01-24

8.  Accurate location of hydrogen atoms in hydrogen bonds of tizoxanide from the combination of experimental and theoretical models.

Authors:  Ana L Reviglio; Fernando A Martínez; Marcos D A Montero; Yamila Garro-Linck; Gustavo A Aucar; Norma R Sperandeo; Gustavo A Monti
Journal:  RSC Adv       Date:  2021-02-17       Impact factor: 3.361

9.  DFT Calculations of 1H- and 13C-NMR Chemical Shifts of Geometric Isomers of Conjugated Linoleic Acid (18:2 ω-7) and Model Compounds in Solution.

Authors:  Themistoklis Venianakis; Christina Oikonomaki; Michael G Siskos; Panayiotis C Varras; Alexandra Primikyri; Eleni Alexandri; Ioannis P Gerothanassis
Journal:  Molecules       Date:  2020-08-11       Impact factor: 4.411

10.  NMR and Computational Studies as Analytical and High-Resolution Structural Tool for Complex Hydroperoxides and Diastereomeric Endo-Hydroperoxides of Fatty Acids in Solution-Exemplified by Methyl Linolenate.

Authors:  Raheel Ahmed; Panayiotis C Varras; Michael G Siskos; Hina Siddiqui; M Iqbal Choudhary; Ioannis P Gerothanassis
Journal:  Molecules       Date:  2020-10-23       Impact factor: 4.411

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