Literature DB >> 26195822

Developmental Switch in the Transcriptional Activity of a Long-Range Regulatory Element.

Fatima-Zohra Braikia1, Caroline Conte1, Mohamed Moutahir1, Yves Denizot2, Michel Cogné3, Ahmed Amine Khamlichi4.   

Abstract

Eukaryotic gene expression is often controlled by distant regulatory elements. In developing B lymphocytes, transcription is associated with V(D)J recombination at immunoglobulin loci. This process is regulated by remote cis-acting elements. At the immunoglobulin heavy chain (IgH) locus, the 3' regulatory region (3'RR) promotes transcription in mature B cells. This led to the notion that the 3'RR orchestrates the IgH locus activity at late stages of B cell maturation only. However, long-range interactions involving the 3'RR were detected in early B cells, but the functional consequences of these interactions were unknown. Here we show that not only does the 3'RR affect transcription at distant sites within the IgH variable region but also it conveys a transcriptional silencing activity on both sense and antisense transcription. The 3'RR-mediated silencing activity is switched off upon completion of VH-DJH recombination. Our findings reveal a developmentally controlled, stage-dependent shift in the transcriptional activity of a master regulatory element.
Copyright © 2015, American Society for Microbiology. All Rights Reserved.

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Year:  2015        PMID: 26195822      PMCID: PMC4561733          DOI: 10.1128/MCB.00509-15

Source DB:  PubMed          Journal:  Mol Cell Biol        ISSN: 0270-7306            Impact factor:   4.272


  52 in total

1.  Localization of the 3' IgH locus elements that effect long-distance regulation of class switch recombination.

Authors:  E Pinaud; A A Khamlichi; C Le Morvan; M Drouet; V Nalesso; M Le Bert; M Cogné
Journal:  Immunity       Date:  2001-08       Impact factor: 31.745

2.  Elucidation of IgH intronic enhancer functions via germ-line deletion.

Authors:  Thomas Perlot; Frederick W Alt; Craig H Bassing; Heikyung Suh; Eric Pinaud
Journal:  Proc Natl Acad Sci U S A       Date:  2005-09-26       Impact factor: 11.205

3.  CCCTC-binding factor (CTCF) and cohesin influence the genomic architecture of the Igh locus and antisense transcription in pro-B cells.

Authors:  Stephanie C Degner; Jiyoti Verma-Gaur; Timothy P Wong; Claudia Bossen; G Michael Iverson; Ali Torkamani; Christian Vettermann; Yin C Lin; Zhongliang Ju; Danae Schulz; Caroline S Murre; Barbara K Birshtein; Nicholas J Schork; Mark S Schlissel; Roy Riblet; Cornelis Murre; Ann J Feeney
Journal:  Proc Natl Acad Sci U S A       Date:  2011-05-23       Impact factor: 11.205

4.  Quantification of V(D)J recombination by real-time quantitative PCR.

Authors:  Fatima-Zohra Braikia; Guillaume Chemin; Mohammed Moutahir; Ahmed Amine Khamlichi
Journal:  Immunol Lett       Date:  2014-08-12       Impact factor: 3.685

5.  Germline deletion of Igh 3' regulatory region elements hs 5, 6, 7 (hs5-7) affects B cell-specific regulation, rearrangement, and insulation of the Igh locus.

Authors:  Sabrina A Volpi; Jiyoti Verma-Gaur; Rabih Hassan; Zhongliang Ju; Sergio Roa; Sanjukta Chatterjee; Uwe Werling; Harry Hou; Britta Will; Ulrich Steidl; Matthew Scharff; Winfried Edelman; Ann J Feeney; Barbara K Birshtein
Journal:  J Immunol       Date:  2012-02-17       Impact factor: 5.422

6.  Complete cis Exclusion upon Duplication of the Eμ Enhancer at the Immunoglobulin Heavy Chain Locus.

Authors:  Nadine Puget; Claire Leduc; Zéliha Oruc; Mohammed Moutahir; Marc Le Bert; Ahmed Amine Khamlichi
Journal:  Mol Cell Biol       Date:  2015-07       Impact factor: 4.272

7.  Antisense transcripts from immunoglobulin heavy-chain locus V(D)J and switch regions.

Authors:  Thomas Perlot; Gang Li; Frederick W Alt
Journal:  Proc Natl Acad Sci U S A       Date:  2008-02-21       Impact factor: 11.205

8.  Regulation of IgH gene assembly: role of the intronic enhancer and 5'DQ52 region in targeting DHJH recombination.

Authors:  Roshi Afshar; Steven Pierce; Daniel J Bolland; Anne Corcoran; Eugene M Oltz
Journal:  J Immunol       Date:  2006-02-15       Impact factor: 5.422

9.  Antisense intergenic transcription precedes Igh D-to-J recombination and is controlled by the intronic enhancer Emu.

Authors:  Daniel J Bolland; Andrew L Wood; Roshi Afshar; Karen Featherstone; Eugene M Oltz; Anne E Corcoran
Journal:  Mol Cell Biol       Date:  2007-05-25       Impact factor: 4.272

Review 10.  Pax5: the guardian of B cell identity and function.

Authors:  César Cobaleda; Alexandra Schebesta; Alessio Delogu; Meinrad Busslinger
Journal:  Nat Immunol       Date:  2007-05       Impact factor: 25.606

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  10 in total

1.  Inducible CTCF insulator delays the IgH 3' regulatory region-mediated activation of germline promoters and alters class switching.

Authors:  Fatima-Zohra Braikia; Chloé Oudinet; Dania Haddad; Zeliha Oruc; Domenico Orlando; Audrey Dauba; Marc Le Bert; Ahmed Amine Khamlichi
Journal:  Proc Natl Acad Sci U S A       Date:  2017-05-22       Impact factor: 11.205

2.  The immunoglobulin heavy chain 3' regulatory region superenhancer controls mouse B1 B-cell fate and late VDJ repertoire diversity.

Authors:  Nour Ghazzaui; Hussein Issaoui; Alexis Saintamand; Christelle Oblet; Claire Carrion; Yves Denizot
Journal:  Blood Adv       Date:  2018-02-13

Review 3.  V(D)J recombination, somatic hypermutation and class switch recombination of immunoglobulins: mechanism and regulation.

Authors:  Xiying Chi; Yue Li; Xiaoyan Qiu
Journal:  Immunology       Date:  2020-02-27       Impact factor: 7.397

4.  Regular Higher Order Repeat Structures in Beetle Tribolium castaneum Genome.

Authors:  Ines Vlahovic; Matko Gluncic; Marija Rosandic; Ðurdica Ugarkovic; Vladimir Paar
Journal:  Genome Biol Evol       Date:  2017-10-01       Impact factor: 3.416

5.  Functional anatomy of the immunoglobulin heavy chain 3΄ super-enhancer needs not only core enhancer elements but also their unique DNA context.

Authors:  Sandrine Le Noir; François Boyer; Sandrine Lecardeur; Mylène Brousse; Zeliha Oruc; Jeanne Cook-Moreau; Yves Denizot; Michel Cogné
Journal:  Nucleic Acids Res       Date:  2017-06-02       Impact factor: 16.971

6.  Eμ and 3'RR IgH enhancers show hierarchic unilateral dependence in mature B-cells.

Authors:  A Saintamand; C Vincent-Fabert; M Marquet; N Ghazzaui; V Magnone; E Pinaud; M Cogné; Y Denizot
Journal:  Sci Rep       Date:  2017-03-27       Impact factor: 4.379

7.  Essential role of the initial activation signal in isotype selection upon deletion of a transcriptionally committed promoter.

Authors:  Joana M Santos; Chloé Oudinet; Lisa Schöne; Audrey Dauba; Ahmed Amine Khamlichi
Journal:  Sci Rep       Date:  2019-12-06       Impact factor: 4.379

Review 8.  Long-Range Control of Class Switch Recombination by Transcriptional Regulatory Elements.

Authors:  Audrey Dauba; Ahmed Amine Khamlichi
Journal:  Front Immunol       Date:  2021-09-14       Impact factor: 7.561

9.  Deciphering the importance of the palindromic architecture of the immunoglobulin heavy-chain 3' regulatory region.

Authors:  Alexis Saintamand; Christelle Vincent-Fabert; Armand Garot; Pauline Rouaud; Zeliha Oruc; Virginie Magnone; Michel Cogné; Yves Denizot
Journal:  Nat Commun       Date:  2016-02-17       Impact factor: 14.919

10.  Recombination may occur in the absence of transcription in the immunoglobulin heavy chain recombination centre.

Authors:  Chloé Oudinet; Fatima-Zohra Braikia; Audrey Dauba; Ahmed Amine Khamlichi
Journal:  Nucleic Acids Res       Date:  2020-04-17       Impact factor: 16.971

  10 in total

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