Literature DB >> 26194467

A computational method for the identification of new candidate carcinogenic and non-carcinogenic chemicals.

Lei Chen1, Chen Chu, Jing Lu, Xiangyin Kong, Tao Huang, Yu-Dong Cai.   

Abstract

Cancer is one of the leading causes of human death. Based on current knowledge, one of the causes of cancer is exposure to toxic chemical compounds, including radioactive compounds, dioxin, and arsenic. The identification of new carcinogenic chemicals may warn us of potential danger and help to identify new ways to prevent cancer. In this study, a computational method was proposed to identify potential carcinogenic chemicals, as well as non-carcinogenic chemicals. According to the current validated carcinogenic and non-carcinogenic chemicals from the CPDB (Carcinogenic Potency Database), the candidate chemicals were searched in a weighted chemical network constructed according to chemical-chemical interactions. Then, the obtained candidate chemicals were further selected by a randomization test and information on chemical interactions and structures. The analyses identified several candidate carcinogenic chemicals, while those candidates identified as non-carcinogenic were supported by a literature search. In addition, several candidate carcinogenic/non-carcinogenic chemicals exhibit structural dissimilarity with validated carcinogenic/non-carcinogenic chemicals.

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Year:  2015        PMID: 26194467     DOI: 10.1039/c5mb00276a

Source DB:  PubMed          Journal:  Mol Biosyst        ISSN: 1742-2051


  6 in total

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Authors:  Liucun Zhu; Yu-Hang Zhang; Fangchu Su; Lei Chen; Tao Huang; Yu-Dong Cai
Journal:  PLoS One       Date:  2016-07-19       Impact factor: 3.240

2.  Identifying novel fruit-related genes in Arabidopsis thaliana based on the random walk with restart algorithm.

Authors:  Yunhua Zhang; Li Dai; Ying Liu; YuHang Zhang; ShaoPeng Wang
Journal:  PLoS One       Date:  2017-05-04       Impact factor: 3.240

3.  Smoking alters the evolutionary trajectory of non-small cell lung cancer.

Authors:  Xiao-Jun Yu; Gang Chen; Jun Yang; Guo-Can Yu; Peng-Fei Zhu; Zheng-Ke Jiang; Kan Feng; Yong Lu; Bin Bao; Fang-Ming Zhong
Journal:  Exp Ther Med       Date:  2019-08-29       Impact factor: 2.447

4.  Mining for Candidate Genes Related to Pancreatic Cancer Using Protein-Protein Interactions and a Shortest Path Approach.

Authors:  Fei Yuan; Yu-Hang Zhang; Sibao Wan; ShaoPeng Wang; Xiang-Yin Kong
Journal:  Biomed Res Int       Date:  2015-11-03       Impact factor: 3.411

5.  Identifying novel genes and chemicals related to nasopharyngeal cancer in a heterogeneous network.

Authors:  Zhandong Li; Lifeng An; Hao Li; ShaoPeng Wang; You Zhou; Fei Yuan; Lin Li
Journal:  Sci Rep       Date:  2016-05-05       Impact factor: 4.379

6.  Cross talk of chromosome instability, CpG island methylator phenotype and mismatch repair in colorectal cancer.

Authors:  Tian-Ming Zhang; Tao Huang; Rong-Fei Wang
Journal:  Oncol Lett       Date:  2018-05-31       Impact factor: 2.967

  6 in total

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