Literature DB >> 26191369

Fragment-Based Discovery of Potent and Selective DDR1/2 Inhibitors.

Christopher W Murray1, Valerio Berdini1, Ildiko M Buck1, Maria E Carr1, Anne Cleasby1, Joseph E Coyle1, Jayne E Curry1, James E H Day1, Phillip J Day1, Keisha Hearn1, Aman Iqbal1, Lydia Y W Lee1, Vanessa Martins1, Paul N Mortenson1, Joanne M Munck1, Lee W Page1, Sahil Patel1, Susan Roomans1, Kirsten Smith1, Emiliano Tamanini1, Gordon Saxty1.   

Abstract

The DDR1 and DDR2 receptor tyrosine kinases are activated by extracellular collagen and have been implicated in a number of human diseases including cancer. We performed a fragment-based screen against DDR1 and identified fragments that bound either at the hinge or in the back pocket associated with the DFG-out conformation of the kinase. Modeling based on crystal structures of potent kinase inhibitors facilitated the "back-to-front" design of potent DDR1/2 inhibitors that incorporated one of the DFG-out fragments. Further optimization led to low nanomolar, orally bioavailable inhibitors that were selective for DDR1 and DDR2. The inhibitors were shown to potently inhibit DDR2 activity in cells but in contrast to unselective inhibitors such as dasatinib, they did not inhibit proliferation of mutant DDR2 lung SCC cell lines.

Entities:  

Keywords:  back to front kinase design; discoidin domain receptor; fragment-based drug design

Year:  2015        PMID: 26191369      PMCID: PMC4499826          DOI: 10.1021/acsmedchemlett.5b00143

Source DB:  PubMed          Journal:  ACS Med Chem Lett        ISSN: 1948-5875            Impact factor:   4.345


  31 in total

1.  BREED: Generating novel inhibitors through hybridization of known ligands. Application to CDK2, p38, and HIV protease.

Authors:  Albert C Pierce; Govinda Rao; Guy W Bemis
Journal:  J Med Chem       Date:  2004-05-20       Impact factor: 7.446

2.  Ligand efficiency: a useful metric for lead selection.

Authors:  Andrew L Hopkins; Colin R Groom; Alexander Alex
Journal:  Drug Discov Today       Date:  2004-05-15       Impact factor: 7.851

3.  Kinase array design, back to front: biaryl amides.

Authors:  Ian Baldwin; Paul Bamborough; Claudine G Haslam; Suchete S Hunjan; Tim Longstaff; Christopher J Mooney; Shila Patel; Jo Quinn; Don O Somers
Journal:  Bioorg Med Chem Lett       Date:  2008-08-22       Impact factor: 2.823

4.  Identification of type II and III DDR2 inhibitors.

Authors:  André Richters; Hoang D Nguyen; Trang Phan; Jeffrey R Simard; Christian Grütter; Julian Engel; Daniel Rauh
Journal:  J Med Chem       Date:  2014-05-05       Impact factor: 7.446

5.  Adaptive responses to dasatinib-treated lung squamous cell cancer cells harboring DDR2 mutations.

Authors:  Yun Bai; Jae-Young Kim; January M Watters; Bin Fang; Fumi Kinose; Lanxi Song; John M Koomen; Jamie K Teer; Kate Fisher; Yian Ann Chen; Uwe Rix; Eric B Haura
Journal:  Cancer Res       Date:  2014-10-27       Impact factor: 12.701

6.  2-aminothiazole as a novel kinase inhibitor template. Structure-activity relationship studies toward the discovery of N-(2-chloro-6-methylphenyl)-2-[[6-[4-(2-hydroxyethyl)-1- piperazinyl)]-2-methyl-4-pyrimidinyl]amino)]-1,3-thiazole-5-carboxamide (dasatinib, BMS-354825) as a potent pan-Src kinase inhibitor.

Authors:  Jagabandhu Das; Ping Chen; Derek Norris; Ramesh Padmanabha; James Lin; Robert V Moquin; Zhongqi Shen; Lynda S Cook; Arthur M Doweyko; Sidney Pitt; Suhong Pang; Ding Ren Shen; Qiong Fang; Henry F de Fex; Kim W McIntyre; David J Shuster; Kathleen M Gillooly; Kamelia Behnia; Gary L Schieven; John Wityak; Joel C Barrish
Journal:  J Med Chem       Date:  2006-11-16       Impact factor: 7.446

7.  Mutations in the DDR2 kinase gene identify a novel therapeutic target in squamous cell lung cancer.

Authors:  Peter S Hammerman; Martin L Sos; Alex H Ramos; Chunxiao Xu; Amit Dutt; Wenjun Zhou; Lear E Brace; Brittany A Woods; Wenchu Lin; Jianming Zhang; Xianming Deng; Sang Min Lim; Stefanie Heynck; Martin Peifer; Jeffrey R Simard; Michael S Lawrence; Robert C Onofrio; Helga B Salvesen; Danila Seidel; Thomas Zander; Johannes M Heuckmann; Alex Soltermann; Holger Moch; Mirjam Koker; Frauke Leenders; Franziska Gabler; Silvia Querings; Sascha Ansén; Elisabeth Brambilla; Christian Brambilla; Philippe Lorimier; Odd Terje Brustugun; Aslaug Helland; Iver Petersen; Joachim H Clement; Harry Groen; Wim Timens; Hannie Sietsma; Erich Stoelben; Jürgen Wolf; David G Beer; Ming Sound Tsao; Megan Hanna; Charles Hatton; Michael J Eck; Pasi A Janne; Bruce E Johnson; Wendy Winckler; Heidi Greulich; Adam J Bass; Jeonghee Cho; Daniel Rauh; Nathanael S Gray; Kwok-Kin Wong; Eric B Haura; Roman K Thomas; Matthew Meyerson
Journal:  Cancer Discov       Date:  2011-06       Impact factor: 39.397

Review 8.  Transmembrane collagen receptors.

Authors:  Birgit Leitinger
Journal:  Annu Rev Cell Dev Biol       Date:  2011-05-13       Impact factor: 13.827

9.  Novel VEGFR-2 kinase inhibitors identified by the back-to-front approach.

Authors:  Kingkan Sanphanya; Suvara K Wattanapitayakul; Suwadee Phowichit; Valery V Fokin; Opa Vajragupta
Journal:  Bioorg Med Chem Lett       Date:  2013-03-20       Impact factor: 2.823

10.  Phosphoproteomics of collagen receptor networks reveals SHP-2 phosphorylation downstream of wild-type DDR2 and its lung cancer mutants.

Authors:  Leo K Iwai; Leo S Payne; Maciej T Luczynski; Francis Chang; Huifang Xu; Ryan W Clinton; Angela Paul; Edward A Esposito; Scott Gridley; Birgit Leitinger; Kristen M Naegle; Paul H Huang
Journal:  Biochem J       Date:  2013-09-15       Impact factor: 3.857

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  12 in total

1.  Tetrahydroisoquinoline-7-carboxamide Derivatives as New Selective Discoidin Domain Receptor 1 (DDR1) Inhibitors.

Authors:  Zhen Wang; Yali Zhang; Sergio G Bartual; Jinfeng Luo; Tingting Xu; Wenting Du; Qiuju Xun; Zhengchao Tu; Rolf A Brekken; Xiaomei Ren; Alex N Bullock; Guang Liang; Xiaoyun Lu; Ke Ding
Journal:  ACS Med Chem Lett       Date:  2017-02-09       Impact factor: 4.345

2.  Discovery of 4-cyclopropyl-3-(2-((1-cyclopropyl-1H-pyrazol-4-yl) amino) quinazolin-6-yl)-N-(3-(trifluoromethyl) phenyl) benzamides as potent discoidin domain receptor inhibitors for the treatment of idiopathic pulmonary fibrosis.

Authors:  Qi Wang; Bixi Tang; Dandan Sun; Ying Dong; Yinchun Ji; Huanyu Shi; Liwei Zhou; Yueyue Yang; Menglan Luo; Qian Tan; Lin Chen; Yue Dong; Cong Li; Rongrong Xie; Yi Zang; Jingkang Shen; Bing Xiong; Jia Li; Danqi Chen
Journal:  Acta Pharm Sin B       Date:  2021-11-17       Impact factor: 14.903

3.  Design and Optimization of 3'-(Imidazo[1,2-a]pyrazin-3-yl)-[1,1'-biphenyl]-3-carboxamides as Selective DDR1 Inhibitors.

Authors:  Cheng Mo; Zhang Zhang; Yupeng Li; Minhao Huang; Jian Zou; Jinfeng Luo; Zheng-Chao Tu; Yong Xu; Xiaomei Ren; Ke Ding; Xiaoyun Lu
Journal:  ACS Med Chem Lett       Date:  2020-01-06       Impact factor: 4.345

4.  What Makes a Kinase Promiscuous for Inhibitors?

Authors:  Sonya M Hanson; George Georghiou; Manish K Thakur; W Todd Miller; Joshua S Rest; John D Chodera; Markus A Seeliger
Journal:  Cell Chem Biol       Date:  2019-01-03       Impact factor: 8.116

5.  Dasatinib-SIK2 Binding Elucidated by Homology Modeling, Molecular Docking, and Dynamics Simulations.

Authors:  Mingsong Shi; Lun Wang; Penghui Li; Jiang Liu; Lijuan Chen; Dingguo Xu
Journal:  ACS Omega       Date:  2021-04-15

Review 6.  Discoidin Domain Receptors: Potential Actors and Targets in Cancer.

Authors:  Hassan Rammal; Charles Saby; Kevin Magnien; Laurence Van-Gulick; Roselyne Garnotel; Emilie Buache; Hassan El Btaouri; Pierre Jeannesson; Hamid Morjani
Journal:  Front Pharmacol       Date:  2016-03-14       Impact factor: 5.810

7.  Two-step release of kinase autoinhibition in discoidin domain receptor 1.

Authors:  Douglas Sammon; Erhard Hohenester; Birgit Leitinger
Journal:  Proc Natl Acad Sci U S A       Date:  2020-08-24       Impact factor: 11.205

8.  Structure-Based Design of Tetrahydroisoquinoline-7-carboxamides as Selective Discoidin Domain Receptor 1 (DDR1) Inhibitors.

Authors:  Zhen Wang; Huan Bian; Sergio G Bartual; Wenting Du; Jinfeng Luo; Hu Zhao; Shasha Zhang; Cheng Mo; Yang Zhou; Yong Xu; Zhengchao Tu; Xiaomei Ren; Xiaoyun Lu; Rolf A Brekken; Libo Yao; Alex N Bullock; Jin Su; Ke Ding
Journal:  J Med Chem       Date:  2016-06-03       Impact factor: 7.446

9.  Design, Synthesis, and Biological Evaluation of 3-(Imidazo[1,2- a]pyrazin-3-ylethynyl)-4-isopropyl- N-(3-((4-methylpiperazin-1-yl)methyl)-5-(trifluoromethyl)phenyl)benzamide as a Dual Inhibitor of Discoidin Domain Receptors 1 and 2.

Authors:  Zhen Wang; Yali Zhang; Daniel M Pinkas; Alice E Fox; Jinfeng Luo; Huocong Huang; Shengyang Cui; Qiuping Xiang; Tingting Xu; Qiuju Xun; Dongsheng Zhu; Zhengchao Tu; Xiaomei Ren; Rolf A Brekken; Alex N Bullock; Guang Liang; Ke Ding; Xiaoyun Lu
Journal:  J Med Chem       Date:  2018-08-20       Impact factor: 7.446

10.  DNA-Encoded Library-Derived DDR1 Inhibitor Prevents Fibrosis and Renal Function Loss in a Genetic Mouse Model of Alport Syndrome.

Authors:  Hans Richter; Alexander L Satz; Marc Bedoucha; Bernd Buettelmann; Ann C Petersen; Anja Harmeier; Ricardo Hermosilla; Remo Hochstrasser; Dominique Burger; Bernard Gsell; Rodolfo Gasser; Sylwia Huber; Melanie N Hug; Buelent Kocer; Bernd Kuhn; Martin Ritter; Markus G Rudolph; Franziska Weibel; Judith Molina-David; Jin-Ju Kim; Javier Varona Santos; Martine Stihle; Guy J Georges; R Daniel Bonfil; Rafael Fridman; Sabine Uhles; Solange Moll; Christian Faul; Alessia Fornoni; Marco Prunotto
Journal:  ACS Chem Biol       Date:  2018-12-16       Impact factor: 5.100

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