Literature DB >> 26185104

Projecting future expansion of invasive species: comparing and improving methodologies for species distribution modeling.

Kumar P Mainali1, Dan L Warren2, Kunjithapatham Dhileepan3, Andrew McConnachie4,5, Lorraine Strathie4, Gul Hassan6, Debendra Karki7, Bharat B Shrestha8, Camille Parmesan9,10.   

Abstract

Modeling the distributions of species, especially of invasive species in non-native ranges, involves multiple challenges. Here, we developed some novel approaches to species distribution modeling aimed at reducing the influences of such challenges and improving the realism of projections. We estimated species-environment relationships for Parthenium hysterophorus L. (Asteraceae) with four modeling methods run with multiple scenarios of (i) sources of occurrences and geographically isolated background ranges for absences, (ii) approaches to drawing background (absence) points, and (iii) alternate sets of predictor variables. We further tested various quantitative metrics of model evaluation against biological insight. Model projections were very sensitive to the choice of training dataset. Model accuracy was much improved using a global dataset for model training, rather than restricting data input to the species' native range. AUC score was a poor metric for model evaluation and, if used alone, was not a useful criterion for assessing model performance. Projections away from the sampled space (i.e., into areas of potential future invasion) were very different depending on the modeling methods used, raising questions about the reliability of ensemble projections. Generalized linear models gave very unrealistic projections far away from the training region. Models that efficiently fit the dominant pattern, but exclude highly local patterns in the dataset and capture interactions as they appear in data (e.g., boosted regression trees), improved generalization of the models. Biological knowledge of the species and its distribution was important in refining choices about the best set of projections. A post hoc test conducted on a new Parthenium dataset from Nepal validated excellent predictive performance of our 'best' model. We showed that vast stretches of currently uninvaded geographic areas on multiple continents harbor highly suitable habitats for parthenium. However, discrepancies between model predictions and parthenium invasion in Australia indicate successful management for this globally significant weed.
© 2015 John Wiley & Sons Ltd.

Entities:  

Keywords:  AUC; Parthenium hysterophorus; boosted regression trees; generalized additive models; generalized linear models; invasive species; model evaluation; nonequilibrium distribution; random forests; species distribution modeling

Mesh:

Year:  2015        PMID: 26185104     DOI: 10.1111/gcb.13038

Source DB:  PubMed          Journal:  Glob Chang Biol        ISSN: 1354-1013            Impact factor:   10.863


  39 in total

Review 1.  What do we really know about alien plant invasion? A review of the invasion mechanism of one of the world's worst weeds.

Authors:  Ali Ahsan Bajwa; Bhagirath Singh Chauhan; Muhammad Farooq; Asad Shabbir; Steve William Adkins
Journal:  Planta       Date:  2016-04-07       Impact factor: 4.116

2.  Invasive alien plant species dynamics in the Himalayan region under climate change.

Authors:  Pramod Lamsal; Lalit Kumar; Achyut Aryal; Kishor Atreya
Journal:  Ambio       Date:  2018-01-25       Impact factor: 5.129

3.  Parthenium weed (Parthenium hysterophorus L.) and climate change: the effect of CO2 concentration, temperature, and water deficit on growth and reproduction of two biotypes.

Authors:  Thi Nguyen; Ali Ahsan Bajwa; Sheldon Navie; Chris O'Donnell; Steve Adkins
Journal:  Environ Sci Pollut Res Int       Date:  2017-03-11       Impact factor: 4.223

4.  Predicting Avian Influenza Co-Infection with H5N1 and H9N2 in Northern Egypt.

Authors:  Sean G Young; Margaret Carrel; George P Malanson; Mohamed A Ali; Ghazi Kayali
Journal:  Int J Environ Res Public Health       Date:  2016-09-06       Impact factor: 3.390

5.  Uncertainty of future projections of species distributions in mountainous regions.

Authors:  Ying Tang; Julie A Winkler; Andrés Viña; Jianguo Liu; Yuanbin Zhang; Xiaofeng Zhang; Xiaohong Li; Fang Wang; Jindong Zhang; Zhiqiang Zhao
Journal:  PLoS One       Date:  2018-01-10       Impact factor: 3.240

6.  Statistical analysis of co-occurrence patterns in microbial presence-absence datasets.

Authors:  Kumar P Mainali; Sharon Bewick; Peter Thielen; Thomas Mehoke; Florian P Breitwieser; Shishir Paudel; Arjun Adhikari; Joshua Wolfe; Eric V Slud; David Karig; William F Fagan
Journal:  PLoS One       Date:  2017-11-16       Impact factor: 3.240

7.  Climatic niche divergence and habitat suitability of eight alien invasive weeds in China under climate change.

Authors:  Ji-Zhong Wan; Chun-Jing Wang; Jing-Fang Tan; Fei-Hai Yu
Journal:  Ecol Evol       Date:  2017-02-08       Impact factor: 2.912

8.  The Host Range and Risk Assessment of the Stem-Boring Weevil, Listronotus setosipennis (Coleoptera: Curculionidae) Proposed for the Biological Control of Parthenium hysterophorus (Asteraceae) in Pakistan.

Authors:  Philip Sebastian Richard Weyl; Abdul Rehman; Kazam Ali
Journal:  Insects       Date:  2021-05-17       Impact factor: 2.769

9.  Predicting global invasion risks: a management tool to prevent future introductions.

Authors:  D H Fletcher; P K Gillingham; J R Britton; S Blanchet; R E Gozlan
Journal:  Sci Rep       Date:  2016-05-20       Impact factor: 4.379

10.  Codling Moth (Lepidoptera: Tortricidae) Establishment in China: Stages of Invasion and Potential Future Distribution.

Authors:  Hongyu Zhu; Sunil Kumar; Lisa G Neven
Journal:  J Insect Sci       Date:  2017-07-01       Impact factor: 1.857

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