Literature DB >> 26184969

Analysis of genome comparison of two Indian isolates of Cowpea aphid-borne mosaic virus from India.

Ritesh Mishra1, Rakesh Kumar Verma1, Rajarshi Kumar Gaur2.   

Abstract

The complete sequence of two Cowpea aphid-borne mosaic virus (CABMV) isolates (RR3 and RR4) from India was determined. Phylogenetic analysis showed that both isolates showed different closeness with other isolates of CABMV. CABMV-RR3 showed maximum identity of 99 % with CABMV-BR1 from Brazil at nucleotide and protein levels, whereas CABMV-RR4 showed identity of 73 and 95 % with CABMV-Z isolate from Zimbabwe at nucleotide and protein levels respectively. Similarity identity matrix revealed 69 % identity at nucleotide level and 91 % at protein level with each other. Recombination breakpoint detection showed that CABMV-MG-Avr from Brazil and CABMV-Z from Zimbabwe act as major parents in our isolates RR3 and RR4, respectively.

Entities:  

Keywords:  Complete sequence; Cowpea aphid-borne mosaic virus; Polyprotein; Potyvirus; Recombination

Mesh：

Substances：

Year:  2015        PMID： 26184969     DOI： 10.1007/s11262-015-1227-4

Source DB:  PubMed          Journal:  Virus Genes        ISSN： 0920-8569            Impact factor:   2.332


  16 in total

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Journal:  Mol Biol Evol       Date:  2011-05-04       Impact factor: 16.240

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Journal:  Virology       Date:  1997-04-28       Impact factor: 3.616

7.  Comparative analysis of the genomes of two isolates of cowpea aphid-borne mosaic virus (CABMV) obtained from different hosts.

Authors:  Danielle R Barros; Poliane Alfenas-Zerbini; José Evando A Beserra; Tathiana F S Antunes; F Murilo Zerbini
Journal:  Arch Virol       Date:  2011-03-16       Impact factor: 2.574

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Journal:  Virology       Date:  1996-12-01       Impact factor: 3.616

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Journal:  Eur J Biochem       Date:  1994-09-01

10.  RDP3: a flexible and fast computer program for analyzing recombination.

Authors:  Darren P Martin; Philippe Lemey; Martin Lott; Vincent Moulton; David Posada; Pierre Lefeuvre
Journal:  Bioinformatics       Date:  2010-08-26       Impact factor: 6.937
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