Literature DB >> 26174760

Monoterpenes as nitrofurantoin resistance modulating agents: minimal structural requirements, molecular dynamics simulations, and the effect of piperitone on the emergence of nitrofurantoin resistance in Enterobacteriaceae.

Ahmad R Shahverdi1, Sako Mirzaie, Fatemeh Rafii, Marjan Kakavand, Alireza Foroumadi.   

Abstract

The effects of different monoterpenes and 2-cyclohexen-1-one on the antibacterial activity of nitrofurantoin against resistant Enterobacter cloacae, were compared and the minimal structural component of monoterpene required for the highest level of resistance-modulating activity was determined. Subinhibitory concentrations of all compounds tested enhanced the antibacterial activity of nitrofurantoin against E. cloacae to different extents. The highest synergistic effect was observed for the monoterpenes, like piperitone, which contained a conjugated ketone and C=C bond in their carbon ring structure. Piperitone also suppressed the emergence of nitrofurantoin-resistant strains of Enterobacteriaceae that were mutagenized by ethyl methanesulfonate. The modes of interaction of carvone, piperitone, and an enzyme inhibitor, benzoate, with nitroreductase were investigated by molecular docking and molecular dynamic (MD) simulation for 20 ns. MD simulation supported greater stability of the benzoate and monoterpene-nitroreductase (NR) complexes than of free NR. The results of this investigation are promising for the synthesis of more effective lead compounds to enhance the antibacterial activity of nitro drugs against resistant Enterobacter strains.

Entities:  

Year:  2015        PMID: 26174760     DOI: 10.1007/s00894-015-2741-y

Source DB:  PubMed          Journal:  J Mol Model        ISSN: 0948-5023            Impact factor:   1.810


  33 in total

1.  Fast, efficient generation of high-quality atomic charges. AM1-BCC model: II. Parameterization and validation.

Authors:  Araz Jakalian; David B Jack; Christopher I Bayly
Journal:  J Comput Chem       Date:  2002-12       Impact factor: 3.376

2.  PRODRG: a tool for high-throughput crystallography of protein-ligand complexes.

Authors:  Alexander W Schüttelkopf; Daan M F van Aalten
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2004-07-21

Review 3.  Antimicrobial resistance in the intensive care unit: mechanisms, epidemiology, and management of specific resistant pathogens.

Authors:  Henry S Fraimow; Constantine Tsigrelis
Journal:  Crit Care Clin       Date:  2011-01       Impact factor: 3.598

4.  Inhibitor binding increases the mechanical stability of staphylococcal nuclease.

Authors:  Chien-Chung Wang; Tian-Yow Tsong; Yau-Heiu Hsu; Piotr E Marszalek
Journal:  Biophys J       Date:  2011-02-16       Impact factor: 4.033

5.  Investigation for antimicrobial resistance-modulating activity of diethyl malate and 1-methyl malate against beta-lactamase class A from Bacillus licheniformis by molecular dynamics, in vitro and in vivo studies.

Authors:  Sako Mirzaie; Kambiz Najafi; Mohammad Saeed Hakhamaneshi; Ahmad Reza Shahverdi; Fardin Fathi
Journal:  J Biomol Struct Dyn       Date:  2014-06-19

6.  Comparison of essential oils from three plants for enhancement of antimicrobial activity of nitrofurantoin against enterobacteria.

Authors:  Fatemeh Rafii; Ahmad R Shahverdi
Journal:  Chemotherapy       Date:  2006-12-28       Impact factor: 2.544

7.  Biochemical characterization of NfsA, the Escherichia coli major nitroreductase exhibiting a high amino acid sequence homology to Frp, a Vibrio harveyi flavin oxidoreductase.

Authors:  S Zenno; H Koike; A N Kumar; R Jayaraman; M Tanokura; K Saigo
Journal:  J Bacteriol       Date:  1996-08       Impact factor: 3.490

8.  Generation of Escherichia coli nitroreductase mutants conferring improved cell sensitization to the prodrug CB1954.

Authors:  Jane I Grove; Andrew L Lovering; Christopher Guise; Paul R Race; Christopher J Wrighton; Scott A White; Eva I Hyde; Peter F Searle
Journal:  Cancer Res       Date:  2003-09-01       Impact factor: 12.701

9.  Steady-state kinetic mechanism, stereospecificity, substrate and inhibitor specificity of Enterobacter cloacae nitroreductase.

Authors:  R L Koder; A F Miller
Journal:  Biochim Biophys Acta       Date:  1998-09-08

10.  In silico structure-function analysis of E. cloacae nitroreductase.

Authors:  Olexandr Isayev; Carlos E Crespo-Hernández; Leonid Gorb; Frances C Hill; Jerzy Leszczynski
Journal:  Proteins       Date:  2012-09-15
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