| Literature DB >> 26172300 |
Jeeyun Lee1, Hee Cheol Kim2, Jung Yong Hong3, Kai Wang4, Sun Young Kim1, Jiryeon Jang1, Seung Tae Kim1, Joon Oh Park1, Ho Yeong Lim1, Won Ki Kang1, Young Suk Park1, Jiyun Lee1, Woo Yong Lee2, Yoon Ah Park2, Jung Wook Huh2, Seong Hyeon Yun2, In-Gu Do5, Seok Hyung Kim5, Sohail Balasubramanian4, Philip J Stephens4, Jeffrey S Ross4,6, Gang Gary Li7, Zachary Hornby7, Siraj M Ali4, Vincent A Miller4, Kyoung-Mee Kim5,8, Sai-Hong Ignatius Ou9.
Abstract
PURPOSE: Anaplastic lymphoma kinase (ALK) rearrangement has been detected in colorectal carcinoma (CRC) using advanced molecular diagnostics tests including exon scanning, fluorescence in situ hybridization (FISH), and next generation sequencing (NGS). We investigated if immunohistochemistry (IHC) can be used to detect ALK rearrangement in gastrointestinal malignancies. EXPERIMENTAL DESIGNS: Tissue microarrays (TMAs) from consecutive gastric carcinoma (GC) and CRC patients who underwent surgical resection at Samsung Medical Center, Seoul, Korea were screened by IHC using ALK monoclonal antibody 5A4. IHC positive cases were confirmed by FISH, nCounter assays, and NGS-based comprehensive genomic profiling (CGP). ALK IHC was further applied to CRC patients enrolled in a pathway-directed therapeutic trial.Entities:
Keywords: anaplastic lymphoma kinase (ALK) rearrangement; colorectal carcinoma; immunohistochemistry; next generation sequencing
Mesh:
Substances:
Year: 2015 PMID: 26172300 PMCID: PMC4695188 DOI: 10.18632/oncotarget.4462
Source DB: PubMed Journal: Oncotarget ISSN: 1949-2553
Characteristics of the colorectal adenocarcinoma patients screened (N = 172)
| Characteristic | Number | (%) |
|---|---|---|
| 59 | (28–84) | |
| 103 | (59.9) | |
| 100 | (58.1) | |
| 54 | (31.4) | |
| 20 | (11.6) | |
| 151 | (87.8) | |
| 161 | (93.6) | |
| 25 | (14.5) | |
| 4 | (2.3) | |
| 79 | (45.9) |
Characteristics of the gastric carcinoma patients screened (N = 432)
| Characteristics | |
|---|---|
| 53, 23–74 | |
| 280 (64.8%) | |
| 256 (59.3%) | |
| 231 (53.5%) | |
| 111 (25.7%) | |
| 139 (32.2%) | |
| 212 (49.1%) | |
| 38 (8.8%) | |
| 40 (9.3%) | |
| 68 (15.7%) |
Figure 1AALK IHC (3+) staining in a rectal adenocarcinoma patient tumor sample
Low power field examination (10X; Left) shows strong cytoplasmic staining in cancer cells compared to control normal colonic crypts. High power examination (40X) shows dense brown granular cytoplasmic staining.
Figure 1BDetection of ALK rearrangement by ALK break-apart by fluorescence in situ hybridization (FISH) in the ALK IHC (3+) rectal adenocarcinoma patient (white arrows)
Figure 1CNanostring 3′/5′ ratio of ALK reporter readout indicating the loss of the 5′portion of ALK gene
Figure 2ASchematic of chromosomal location and transcription direction and breakpoint of CAD and ALK genes in the CAD-ALK positive CRC patient
Figure 2BSchematic of the CAD-ALK fusion protein domains and potential dimerization domains
Comparison of the methods and clinicopathologic characteristics of ALK+ CRC patients identified from this study and in the literature
| Study | Aisner et al. [ | Huoang et al. [ | This report | This report |
|---|---|---|---|---|
| Frequency | 1/236 | 1/1889 (0.05%) | 1/172 (0.6%-total) | 1 out of 50 CRC (2%) |
| Screening Method | FISH | IHC (5A4 antibody) | IHC (5A4 antibody) | IHC (5A4 antibody) |
| Confirmation method | RT-PCR | FISH (Vysis Abbott Molecular) | FISH (Vysis Abbott Molecular), | FISH (Vysis Abbott Molecular), Nanostring, |
| Source of tissue | TMA | TMA | TMA | Patient tumor tissue |
| Location | Rectum | Colon (distal transverse) | Rectum | Colon |
| Age | 84 | 87 | 46 | 65 |
| Ethnicity | Australian | Australian | Korean | Korean |
| Gender | Female | Female | Female | Male |
| ALK Fusion partner | EML4 | NR | CAD | EML4 |
| ALK fusion variant | NR | |||
| Histologic differentiation | NR | NR | Poor | Poor |
| Signet ring features | No | No | No | No |
| Site of metastasis | Lymph nodes, lung | None | Lymph nodes, lung,pericardium | Mediastinal/cervical lymph nodes |
| Pattern of expression of ALK rearrangement | Scattered, in areas of high grade dysplasia, with intratumoral heterogeneity | Diffuse | Diffuse, cytoplasmic | Diffuse |
| KRAS G12A | Wildtype | Wildtype | Wildtype | |
| NR | Wildtype | Wildtype | Wildtype |
236 out of 286 tumor samples evaluable;
CAD: carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase; EML4: echinoderm microtubule associated protein like 4;
IHC: immunohistochemistry; FISH: fluorescence in situ hybridization; MSI: microsatellite instability; MSS: microsatellite stable NA; not applicable; NGS; next generation sequencing; NR: not reported; RT-PCR: reverse transcriptase-polymerase chain reaction; TMA: tissue microarray;
Figure 3A2-deoxy-2-(18F)fluoro-D-glucose positron emission tomography (PET) scan of the EML4-ALK CRC patient at the time of presentation demonstrating metastatic retroperitoneal and cervical lymph nodes metastasis
Figure 3BALK IHC showing strong diffuse staining of ALK antibody (3+) of the EML4-ALK (E21; A20) adenocarcinoma of the colon patient after palliative resection
Figure 3CBreak-apart ALK FISH of the EML4-ALK (E21;A20) colon patient demonstrating the presence of breakapart signals in 50% cells
Figure 3DInhibition of the growth of the EML4-ALK CRC patient derived tumor cells with 1 μM crizotinib or 1 μM entrectinib
Figure 3EWestern blot demonstrating Inhibition of the phosphorylation of the ALK protein and other downstream signal molecules in the EML4-ALK CRC patient tumor derived cell line after inhibition by crizotinib or entrectinib