| Literature DB >> 26165383 |
Michelle A T Hildebrandt1, Jack A Roth2, Ara A Vaporciyan2, Xia Pu1, Yuanqing Ye1, Arlene M Correa2, Jae Y Kim3, Stephen G Swisher2, Xifeng Wu1.
Abstract
Post-operative pulmonary complications are the most common morbidity associated with lung resection in non-small cell lung cancer (NSCLC) patients. The TNF/TRAF2/ASK1/p38 kinase pathway is activated by stress stimuli and inflammatory signals. We hypothesized that genetic polymorphisms within this pathway may contribute to risk of complications. In this case-only study, we genotyped 173 germline genetic variants in a discovery population of 264 NSCLC patients who underwent a lobectomy followed by genotyping of the top variants in a replication population of 264 patients. Complications data was obtained from a prospective database at MD Anderson. MAP2K4:rs12452497 was significantly associated with a decreased risk in both phases, resulting in a 40% reduction in the pooled population (95% CI:0.43-0.83, P = 0.0018). In total, seven variants were significant for risk in the pooled analysis. Gene-based analysis supported the involvement of TRAF2, MAP2K4, and MAP3K5 as mediating complications risk and a highly significant trend was identified between the number of risk genotypes and complications risk (P = 1.63 × 10(-8)). An inverse relationship was observed between association with clinical outcomes and complications for two variants. These results implicate the TNF/TRAF2/ASK1/p38 kinase pathway in modulating risk of pulmonary complications following lobectomy and may be useful biomarkers to identify patients at high risk.Entities:
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Year: 2015 PMID: 26165383 PMCID: PMC4499815 DOI: 10.1038/srep12068
Source DB: PubMed Journal: Sci Rep ISSN: 2045-2322 Impact factor: 4.379
Host characteristics.
| Discovery Population, N (%) | Replication Population, N (%) | |
|---|---|---|
| Total | 264 | 264 |
| Age at Surgery, mean (SD) | 65.41 (10.01) | 65.53 (9.93) |
| Gender | ||
| Male | 141(53.4) | 139(52.7) |
| Female | 123(46.6) | 125(47.3) |
| Smoking Status | ||
| Never Smoked | 54(20.5) | 47(17.8) |
| >5yr prior | 79(29.9) | 89(33.7) |
| >12 mo – ≤5yr prior | 26(9.8) | 29(11.0) |
| >1 mo – ≤12 mo prior | 37(14.0) | 33(12.5) |
| >14 days – ≤1 mo prior | 34(12.9) | 33(12.5) |
| 0–14 days prior | 31(11.7) | 31(11.7) |
| Missing | 3(1.1) | 2(0.8) |
| Stage | ||
| I | 174(65.9) | 169(64.0) |
| II | 37(14.0) | 31(11.7) |
| III | 51(19.3) | 56(21.2) |
| IV | 2(0.8) | 8(3.0) |
| DLCO% predicted, mean (SD) | 80.12 (20.12) | 79.68 (19.49) |
| Year of Surgery | ||
| 1994–1999 | 41(15.5) | 35(13.3) |
| 2000–2005 | 126(47.7) | 132(50.0) |
| 2006–2009 | 97(36.7) | 97(36.7) |
| Chest Wall Resection | ||
| Yes | 12(4.5) | 17(6.4) |
| No | 252(95.5) | 247(93.6) |
| Intra-operative Transfusion | ||
| Yes | 12(4.5) | 11(4.2) |
| No | 252(95.5) | 253(95.8) |
| Pulmonary Complications | ||
| Yes | 92(35.4) | 103(40.1) |
| No | 168(64.6) | 154(59.9) |
| Missing | 4 | 7 |
*some of the percentages may not be equal to 100% due to rounding.
Results from top genetic variants associated with post-operative pulmonary complications.
| Discovery Population | Replication Population | Pooled Population | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Gene | SNP | OR (unadjusted) | P-value | P-value | P-value | P-value | ||||
| TRAF2 | rs6560652 | dom | 4.10 (1.97–8.51) | 0.00015 | 4.65 (2.03–10.68) | 0.00029 | 1.34 (0.71–2.53) | 0.37 | 2.25 (1.38–3.66) | 0.0011 |
| MAP2K4 | rs12452497 | add | 0.64 (0.41–1.00) | 0.050 | 0.57 (0.35–0.92 | 0.023 | 0.63 (0.41–0.98) | 0.60 (0.43–0.83) | 0.0018 | |
| MAP3K5 | rs9389421 | dom | 1.70 (0.98–2.94) | 0.058 | 2.00 (1.08–3.72) | 0.028 | 1.76 (0.97–3.19) | 1.92 (1.25–2.93) | 0.0027 | |
| MAP3K5 | rs13195420 | dom | 0.60 (0.35–1.00) | 0.051 | 0.52 (0.29–0.91) | 0.023 | 0.58 (0.33–1.01) | 0.55 (0.37–0.81) | 0.0029 | |
| MAP3K5 | rs13193586 | dom | 1.73 (0.82–3.65) | 0.15 | 2.49 (1.08–5.75) | 0.033 | 2.04 (0.78–5.30) | 0.14 | 2.24 (1.20–4.18) | 0.011 |
| MAP3K5 | rs13203080 | rec | 3.90 (1.14–13.34) | 0.030 | 4.86 (1.14–20.74) | 0.033 | n/a | n/a | 5.38 (1.33–21.72) | 0.018 |
| TNF | rs1800629 | dom | 2.10 (1.18–3.44) | 0.011 | 2.46 (1.35–4.46) | 0.0032 | 1.00 (0.55–1.82) | 0.99 | 1.55 (1.02–2.34) | 0.039 |
| DAXX | rs3130100 | dom | 1.34 (0.77–2.35) | 0.31 | 1.90 (1.01–3.57) | 0.047 | 1.11 (0.61–2.02) | 0.74 | 1.42 (0.93–2.18) | 0.11 |
| MAP2K4 | rs7207011 | dom | 2.93 (1.01–8.50) | 0.048 | 3.63 (1.11–11.82) | 0.032 | 0.95 (0.35–2.54) | 0.91 | 1.70 (0.82–3.50) | 0.15 |
| TNFRSF1B | rs17037696 | dom | 1.67 (1.00–2.79) | 0.052 | 1.76 (1.01–3.08) | 0.048 | 0.77 (0.44–1.32) | 0.34 | 1.12 (0.76–1.65) | 0.56 |
| TRAF2 | rs7019752 | dom | 2.06 (1.11–3.80) | 0.021 | 2.17 (1.09–4.33) | 0.028 | 0.55 (0.28–1.07) | 0.076 | 1.04 (0.66–1.65) | 0.86 |
aAdjusted for age at surgery, gender, intra-operative transfusion, % DLCO predicted, and chest wall resection.
bModel of inheritance: dom – dominant, rec – recessive, add – additive.
Bold indicates significance (P < 0.05) and underline indicates borderline significance (P < 0.10) in replication or pooled population.
Cumulative effect of TNF/TRAF2/ASK1/p38 kinase signaling pathway variants on lung complications risk.
| # of Risk Genotypes | Event, N(%) | No Event, N(%) | P-value | |
|---|---|---|---|---|
| 0 to 2 | 41(23.84%) | 131(76.16%) | 1(reference) | |
| 3 | 56(38.89%) | 88(61.11%) | 2.10(1.23–3.59) | 6.46 × 10−8 |
| 4 to 5 | 97(48.50%) | 103(51.50%) | 3.95(2.40–6.50) | 6.10 × 10−8 |
| P for trend | 1.63 × 10−8 |
aAdjusted for age at surgery, gender, intra-operative transfusion, % DLCO predicted, and chest wall resection.
Figure 1Potential higher-order gene-gene interactions among TNF/TRAF2/ASK1/p38 kinase signaling pathway variants.
Abbreviations: C = common allele, V = variant allele.
Higher-order gene-gene interactions among TNF/TRAF2/ASK1/p38 kinase signaling pathway variants modulating lung complications risk.
| Nodes | Event, N(%) | No Event, N(%) | P-value | |
|---|---|---|---|---|
| 1 and 2 | 39(24.22%) | 122(75.78%) | 1(reference) | 0.066 |
| 3 | 59(35.33%) | 108(64.67%) | 1.63(0.97–2.75) | |
| 4 and 5 | 97(51.32%) | 92(48.68%) | 3.88(2.34–6.43) | 1.47 × 10−7 |
| P for trend | 7.63 × 10−8 |
aAdjusted for age at surgery, gender, intra-operative transfusion, % DLCO predicted, and chest wall resection.