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Literature DB >> 26163988

EPBscore: a Novel Method for Computer-Assisted Analysis of Axonal Structure and Dynamics.

S Song¹, F W Grillo², J Xi³, V Ferretti², G Gao³, V De Paola⁴.

Abstract

Entities: Chemical

Keywords: Aging; Automated analysis; Axonal boutons; Axons; Connectivity; In vivo 2-photon imaging; Learning and memory; Presynaptic; Segmentation; Synaptic plasticity

Mesh：

Year: 2016 PMID： 26163988 DOI： 10.1007/s12021-015-9274-5

Source DB: PubMed Journal: Neuroinformatics ISSN： 1539-2791

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26 in total

Review 1. Deep tissue two-photon microscopy.

Authors: Fritjof Helmchen; Winfried Denk
Journal: Nat Methods Date: 2005-12 Impact factor: 28.547

2. Ion-channel noise places limits on the miniaturization of the brain's wiring.

Authors: A Aldo Faisal; John A White; Simon B Laughlin
Journal: Curr Biol Date: 2005-06-21 Impact factor: 10.834

3. Repulsive force based snake model to segment and track neuronal axons in 3D microscopy image stacks.

Authors: Hongmin Cai; Xiaoyin Xu; Ju Lu; Jeff W Lichtman; S P Yung; Stephen T C Wong
Journal: Neuroimage Date: 2006-07-24 Impact factor: 6.556

4. Inhibitory dendrite dynamics as a general feature of the adult cortical microcircuit.

Authors: Jerry L Chen; Genevieve H Flanders; Wei-Chung Allen Lee; Walter C Lin; Elly Nedivi
Journal: J Neurosci Date: 2011-08-31 Impact factor: 6.167

5. A broadly applicable 3-D neuron tracing method based on open-curve snake.

Authors: Yu Wang; Arunachalam Narayanaswamy; Chia-Ling Tsai; Badrinath Roysam
Journal: Neuroinformatics Date: 2011-09

Review 6. The DIADEM data sets: representative light microscopy images of neuronal morphology to advance automation of digital reconstructions.

Authors: Kerry M Brown; Germán Barrionuevo; Alison J Canty; Vincenzo De Paola; Judith A Hirsch; Gregory S X E Jefferis; Ju Lu; Marjolein Snippe; Izumi Sugihara; Giorgio A Ascoli
Journal: Neuroinformatics Date: 2011-09

7. Axonal dynamics of excitatory and inhibitory neurons in somatosensory cortex.

Authors: Sally A Marik; Homare Yamahachi; Justin N J McManus; Gabor Szabo; Charles D Gilbert
Journal: PLoS Biol Date: 2010-06-15 Impact factor: 8.029

8. Long-term, high-resolution imaging in the mouse neocortex through a chronic cranial window.

Authors: Anthony Holtmaat; Tobias Bonhoeffer; David K Chow; Jyoti Chuckowree; Vincenzo De Paola; Sonja B Hofer; Mark Hübener; Tara Keck; Graham Knott; Wei-Chung A Lee; Ricardo Mostany; Tom D Mrsic-Flogel; Elly Nedivi; Carlos Portera-Cailliau; Karel Svoboda; Joshua T Trachtenberg; Linda Wilbrecht
Journal: Nat Protoc Date: 2009-07-16 Impact factor: 13.491

9. Increased axonal bouton dynamics in the aging mouse cortex.

Authors: Federico W Grillo; Sen Song; Leonor M Teles-Grilo Ruivo; Lieven Huang; Ge Gao; Graham W Knott; Bohumil Maco; Valentina Ferretti; Dawn Thompson; Graham E Little; Vincenzo De Paola
Journal: Proc Natl Acad Sci U S A Date: 2013-03-29 Impact factor: 11.205

EPBscore: a Novel Method for Computer-Assisted Analysis of Axonal Structure and Dynamics.

Review 1. Deep tissue two-photon microscopy.

2. Ion-channel noise places limits on the miniaturization of the brain's wiring.

3. Repulsive force based snake model to segment and track neuronal axons in 3D microscopy image stacks.

4. Inhibitory dendrite dynamics as a general feature of the adult cortical microcircuit.

5. A broadly applicable 3-D neuron tracing method based on open-curve snake.

Review 6. The DIADEM data sets: representative light microscopy images of neuronal morphology to advance automation of digital reconstructions.

7. Axonal dynamics of excitatory and inhibitory neurons in somatosensory cortex.

8. Long-term, high-resolution imaging in the mouse neocortex through a chronic cranial window.

9. Increased axonal bouton dynamics in the aging mouse cortex.

10. Experience leaves a lasting structural trace in cortical circuits.

1. BoutonNet: an automatic method to detect anterogradely labeled presynaptic boutons in brain tissue sections.

2. Detection of axonal synapses in 3D two-photon images.

3. Presynaptic Boutons That Contain Mitochondria Are More Stable.

4. Computer assisted detection of axonal bouton structural plasticity in in vivo time-lapse images.

5. In vivo imaging of injured cortical axons reveals a rapid onset form of Wallerian degeneration.