Literature DB >> 26162532

In silico prediction of drug-induced myelotoxicity by using Naïve Bayes method.

Hui Zhang1,2, Peng Yu3, Teng-Guo Zhang3, Yan-Li Kang3, Xiao Zhao3, Yuan-Yuan Li3, Jia-Hui He3, Ji Zhang3,4.   

Abstract

Drug-induced myelotoxicity usually leads to decrease the production of platelets, red cells, and white cells. Thus, early identification and characterization of myelotoxicity hazard in drug development is very necessary. The purpose of this investigation was to develop a prediction model of drug-induced myelotoxicity by using a Naïve Bayes classifier. For comparison, other prediction models based on support vector machine and single-hidden-layer feed-forward neural network  methods were also established. Among all the prediction models, the Naïve Bayes classification model showed the best prediction performance, which offered an average overall prediction accuracy of [Formula: see text] for the training set and [Formula: see text] for the external test set. The significant contributions of this study are that we first developed a Naïve Bayes classification model of drug-induced myelotoxicity adverse effect using a larger scale dataset, which could be employed for the prediction of drug-induced myelotoxicity. In addition, several important molecular descriptors and substructures of myelotoxic compounds have been identified, which should be taken into consideration in the design of new candidate compounds to produce safer and more effective drugs, ultimately reducing the attrition rate in later stages of drug development.

Entities:  

Keywords:  Extended connectivity fingerprints (ECFP_6); Feed-forward neural network; In silico prediction; Myelotoxicity; Naïve Bayes classifier; Support vector machine method

Mesh:

Substances:

Year:  2015        PMID: 26162532     DOI: 10.1007/s11030-015-9613-3

Source DB:  PubMed          Journal:  Mol Divers        ISSN: 1381-1991            Impact factor:   2.943


  33 in total

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Journal:  Drug Discov Today       Date:  2004-01-01       Impact factor: 7.851

3.  Using extended-connectivity fingerprints with Laplacian-modified Bayesian analysis in high-throughput screening follow-up.

Authors:  David Rogers; Robert D Brown; Mathew Hahn
Journal:  J Biomol Screen       Date:  2005-09-16

4.  The development of fibroblast colonies in monolayer cultures of guinea-pig bone marrow and spleen cells.

Authors:  A J Friedenstein; R K Chailakhjan; K S Lalykina
Journal:  Cell Tissue Kinet       Date:  1970-10

5.  Rapid and accurate assessment of seizure liability of drugs by using an optimal support vector machine method.

Authors:  Hui Zhang; Wei Li; Yang Xie; Wen-Jing Wang; Lin-Li Li; Sheng-Yong Yang
Journal:  Toxicol In Vitro       Date:  2011-05-27       Impact factor: 3.500

6.  Inhibition of CFU-E/BFU-E by 3'-azido-3'-deoxythymidine, chlorpropamide, and protoporphirin IX zinc (II): a comparison between direct exposure of progenitor cells and long-term exposure of bone marrow cultures.

Authors:  L Gribaldo; I Malerba; A Collotta; S Casati; A Pessina
Journal:  Toxicol Sci       Date:  2000-11       Impact factor: 4.849

7.  The myelotoxicity of chloramphenicol: in vitro and in vivo studies: II: In vivo myelotoxicity in the B6C3F1 mouse.

Authors:  D E Holt; C M Andrews; J P Payne; T C Williams; J A Turton
Journal:  Hum Exp Toxicol       Date:  1998-01       Impact factor: 2.903

8.  In vitro toxicity of trichothecenes on human erythroblastic progenitors.

Authors:  B Rio; S Lautraite; D Parent-Massin
Journal:  Hum Exp Toxicol       Date:  1997-11       Impact factor: 2.903

9.  In silico prediction of mitochondrial toxicity by using GA-CG-SVM approach.

Authors:  Hui Zhang; Qing-Yi Chen; Ming-Li Xiang; Chang-Ying Ma; Qi Huang; Sheng-Yong Yang
Journal:  Toxicol In Vitro       Date:  2008-10-02       Impact factor: 3.500

10.  Predicting cytotoxicity from heterogeneous data sources with Bayesian learning.

Authors:  Sarah R Langdon; Joanna Mulgrew; Gaia V Paolini; Willem P van Hoorn
Journal:  J Cheminform       Date:  2010-12-09       Impact factor: 5.514

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  3 in total

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2.  Identifying Novel ATX Inhibitors via Combinatory Virtual Screening Using Crystallography-Derived Pharmacophore Modelling, Docking Study, and QSAR Analysis.

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3.  Sentiment analysis for cruises in Saudi Arabia on social media platforms using machine learning algorithms.

Authors:  Bador Al Sari; Rawan Alkhaldi; Dalia Alsaffar; Tahani Alkhaldi; Hanan Almaymuni; Norah Alnaim; Najwa Alghamdi; Sunday O Olatunji
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