Literature DB >> 26154420

Quantitative Redox Imaging Software.

Mark D Fricker1.   

Abstract

SIGNIFICANCE: A wealth of fluorescent reporters and imaging systems are now available to characterize dynamic physiological processes in living cells with high spatiotemporal resolution. The most reliable probes for quantitative measurements show shifts in their excitation or emission spectrum, rather than just a change in intensity, as spectral shifts are independent of optical path length, illumination intensity, probe concentration, and photobleaching, and they can be easily determined by ratiometric measurements at two wavelengths. RECENT ADVANCES: A number of ratiometric fluorescent reporters, such as reduction-oxidation-sensitive green fluorescent protein (roGFP), have been developed that respond to the glutathione redox potential and allow redox imaging in vivo. roGFP and its derivatives can be expressed in the cytoplasm or targeted to different organelles, giving fine control of measurements from sub-cellular compartments. Furthermore, roGFP can be imaged with probes for other physiological parameters, such as reactive oxygen species or mitochondrial membrane potential, to give multi-channel, multi-dimensional 4D (x,y,z,t) images. CRITICAL ISSUES: Live cell imaging approaches are needed to capture transient or highly spatially localized physiological behavior from intact, living specimens, which are often not accessible by other biochemical or genetic means. FUTURE DIRECTIONS: The next challenge is to be able to extract useful data rapidly from such large (GByte) images with due care given to the assumptions used during image processing. This article describes a suite of software programs, available for download, that provide intuitive user interfaces to conduct multi-channel ratio imaging, or alternative analysis methods such as pixel-population statistics or image segmentation and object-based ratio analysis. Antioxid. Redox Signal. 24, 752-762.

Entities:  

Mesh:

Substances:

Year:  2015        PMID: 26154420     DOI: 10.1089/ars.2015.6390

Source DB:  PubMed          Journal:  Antioxid Redox Signal        ISSN: 1523-0864            Impact factor:   8.401


  29 in total

1.  Redox-mediated kick-start of mitochondrial energy metabolism drives resource-efficient seed germination.

Authors:  Thomas Nietzel; Jörg Mostertz; Cristina Ruberti; Guillaume Née; Philippe Fuchs; Stephan Wagner; Anna Moseler; Stefanie J Müller-Schüssele; Abdelilah Benamar; Gernot Poschet; Michael Büttner; Ian Max Møller; Christopher H Lillig; David Macherel; Markus Wirtz; Rüdiger Hell; Iris Finkemeier; Andreas J Meyer; Falko Hochgräfe; Markus Schwarzländer
Journal:  Proc Natl Acad Sci U S A       Date:  2019-12-23       Impact factor: 11.205

2.  Hydrogen Sulfide Increases Production of NADPH Oxidase-Dependent Hydrogen Peroxide and Phospholipase D-Derived Phosphatidic Acid in Guard Cell Signaling.

Authors:  Denise Scuffi; Thomas Nietzel; Luciano M Di Fino; Andreas J Meyer; Lorenzo Lamattina; Markus Schwarzländer; Ana M Laxalt; Carlos García-Mata
Journal:  Plant Physiol       Date:  2018-02-02       Impact factor: 8.340

3.  Immobilized Subpopulations of Leaf Epidermal Mitochondria Mediate PENETRATION2-Dependent Pathogen Entry Control in Arabidopsis.

Authors:  Rene Fuchs; Michaela Kopischke; Christine Klapprodt; Gerd Hause; Andreas J Meyer; Markus Schwarzländer; Mark D Fricker; Volker Lipka
Journal:  Plant Cell       Date:  2015-12-31       Impact factor: 11.277

4.  In Vivo Detection of Reactive Oxygen Species and Redox Status in Caenorhabditis elegans.

Authors:  Bart P Braeckman; Arne Smolders; Patricia Back; Sasha De Henau
Journal:  Antioxid Redox Signal       Date:  2016-09-12       Impact factor: 8.401

5.  Physiological Characterization of a Plant Mitochondrial Calcium Uniporter in Vitro and in Vivo.

Authors:  Enrico Teardo; Luca Carraretto; Stephan Wagner; Elide Formentin; Smrutisanjita Behera; Sara De Bortoli; Véronique Larosa; Philippe Fuchs; Fiorella Lo Schiavo; Anna Raffaello; Rosario Rizzuto; Alex Costa; Markus Schwarzländer; Ildiko Szabò
Journal:  Plant Physiol       Date:  2016-12-28       Impact factor: 8.340

6.  Deficiency in the Phosphorylated Pathway of Serine Biosynthesis Perturbs Sulfur Assimilation.

Authors:  Armand D Anoman; María Flores-Tornero; Ruben M Benstein; Samira Blau; Sara Rosa-Téllez; Andrea Bräutigam; Alisdair R Fernie; Jesús Muñoz-Bertomeu; Sören Schilasky; Andreas J Meyer; Stanislav Kopriva; Juan Segura; Stephan Krueger; Roc Ros
Journal:  Plant Physiol       Date:  2019-02-20       Impact factor: 8.340

7.  MSL1 is a mechanosensitive ion channel that dissipates mitochondrial membrane potential and maintains redox homeostasis in mitochondria during abiotic stress.

Authors:  Chun Pong Lee; Grigory Maksaev; Gregory S Jensen; Monika W Murcha; Margaret E Wilson; Mark Fricker; Ruediger Hell; Elizabeth S Haswell; A Harvey Millar; Lee J Sweetlove
Journal:  Plant J       Date:  2016-11-03       Impact factor: 6.417

8.  The EF-Hand Ca2+ Binding Protein MICU Choreographs Mitochondrial Ca2+ Dynamics in Arabidopsis.

Authors:  Stephan Wagner; Smrutisanjita Behera; Sara De Bortoli; David C Logan; Philippe Fuchs; Luca Carraretto; Enrico Teardo; Laura Cendron; Thomas Nietzel; Magdalena Füßl; Fabrizio G Doccula; Lorella Navazio; Mark D Fricker; Olivier Van Aken; Iris Finkemeier; Andreas J Meyer; Ildikò Szabò; Alex Costa; Markus Schwarzländer
Journal:  Plant Cell       Date:  2015-11-03       Impact factor: 11.277

9.  Sensing stress responses in potato with whole-plant redox imaging.

Authors:  Matanel Hipsch; Nardy Lampl; Einat Zelinger; Orel Barda; Daniel Waiger; Shilo Rosenwasser
Journal:  Plant Physiol       Date:  2021-10-05       Impact factor: 8.340

Review 10.  A Sight on Single-Cell Transcriptomics in Plants Through the Prism of Cell-Based Computational Modeling Approaches: Benefits and Challenges for Data Analysis.

Authors:  Aleksandr Bobrovskikh; Alexey Doroshkov; Stefano Mazzoleni; Fabrizio Cartenì; Francesco Giannino; Ulyana Zubairova
Journal:  Front Genet       Date:  2021-05-21       Impact factor: 4.599

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.