Literature DB >> 26153745

Characterization of the mitochondrial genome of Amolops tuberodepressus (Anura: Ranidae).

Chaohua Zhang1,2, Yun Xia1, Xiaomao Zeng1.   

Abstract

Amolops tuberodepressus is a vulnerable torrent frog, and only know distributed in the Wuliang Mountain in southwestern China. In the present study, the mitochondrial DNA (mtDNA) sequence of A. tuberodepressus was determined. The genome was 18 348 bp in length, and it contained 37 genes (13 protein-coding genes, two ribosomal RNAs, and 22 transfer RNAs), one partial control region and one light strand replication origin. The gene rearrangement was observed within the WANCY tRNA gene cluster region, which similar to other Amolops species. In this paper, we utilized 13 protein-coding genes of A. tuberodepressus and other 10 closely ranid species to construct the species phylogenetic tree to verify the A. tuberodepressus was accuracy.

Entities:  

Keywords:  Gene rearrangement; mitochondrial; phylogeny; torrent frog

Mesh:

Substances:

Year:  2015        PMID: 26153745     DOI: 10.3109/19401736.2015.1060425

Source DB:  PubMed          Journal:  Mitochondrial DNA A DNA Mapp Seq Anal        ISSN: 2470-1394            Impact factor:   1.514


  4 in total

1.  Next-generation sequencing of mixed genomic DNA allows efficient assembly of rearranged mitochondrial genomes in Amolops chunganensis and Quasipaa boulengeri.

Authors:  Siqi Yuan; Yun Xia; Yuchi Zheng; Xiaomao Zeng
Journal:  PeerJ       Date:  2016-12-15       Impact factor: 2.984

2.  The complete mitogenome of the granular torrent frog, Amolops granulosus (Anura: Ranidae).

Authors:  An Huang; Hongdi Luo; Sangdawa Luo; Haijun Li; Qingyong Ni; Yongfang Yao; Huailiang Xu; Bo Zeng; Ying Li; Zhimin Wei; Mingwang Zhang
Journal:  Mitochondrial DNA B Resour       Date:  2019-07-19       Impact factor: 0.658

3.  The first complete mitochondrial genome sequence of Nanorana parkeri and Nanorana ventripunctata (Amphibia: Anura: Dicroglossidae), with related phylogenetic analyses.

Authors:  Lichun Jiang; Zhangqiang You; Peng Yu; Qiping Ruan; Wei Chen
Journal:  Ecol Evol       Date:  2018-06-11       Impact factor: 2.912

4.  The complete mitochondrial genome of Pyxicephalus adspersus: high gene rearrangement and phylogenetics of one of the world's largest frogs.

Authors:  Yin-Yin Cai; Shi-Qi Shen; Li-Xu Lu; Kenneth B Storey; Dan-Na Yu; Jia-Yong Zhang
Journal:  PeerJ       Date:  2019-08-23       Impact factor: 2.984

  4 in total

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