Literature DB >> 26152720

Introduction: Metals in Biology: α-Ketoglutarate/Iron-Dependent Dioxygenases.

F Peter Guengerich1.   

Abstract

Four minireviews deal with aspects of the α-ketoglutarate/iron-dependent dioxygenases in this eighth Thematic Series on Metals in Biology. The minireviews cover a general introduction and synopsis of the current understanding of mechanisms of catalysis, the roles of these dioxygenases in post-translational protein modification and de-modification, the roles of the ten-eleven translocation (Tet) dioxygenases in the modification of methylated bases (5mC, T) in DNA relevant to epigenetic mechanisms, and the roles of the AlkB-related dioxygenases in the repair of damaged DNA and RNA. The use of α-ketoglutarate (alternatively termed 2-oxoglutarate) as a co-substrate in so many oxidation reactions throughout much of nature is notable and has surprisingly emerged from biochemical and genomic analysis. About 60 of these enzymes are now recognized in humans, and a number have been identified as having critical functions.
© 2015 by The American Society for Biochemistry and Molecular Biology, Inc.

Entities:  

Keywords:  DNA demethylation; DNA repair; dioxygenase; histone demethylase; hydroxylase; iron; post-translational modification (PTM)

Mesh:

Substances:

Year:  2015        PMID: 26152720      PMCID: PMC4543631          DOI: 10.1074/jbc.R115.675652

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  17 in total

Review 1.  Thematic minireview series: Metals in Biology 2012.

Authors:  F Peter Guengerich
Journal:  J Biol Chem       Date:  2012-03-02       Impact factor: 5.157

Review 2.  The Mechanisms of Generation, Recognition, and Erasure of DNA 5-Methylcytosine and Thymine Oxidations.

Authors:  Hideharu Hashimoto; Xing Zhang; Paula M Vertino; Xiaodong Cheng
Journal:  J Biol Chem       Date:  2015-07-07       Impact factor: 5.157

3.  Cytochrome P450 3A Enzymes Catalyze the O6-Demethylation of Thebaine, a Key Step in Endogenous Mammalian Morphine Biosynthesis.

Authors:  Valerie M Kramlinger; Mónica Alvarado Rojas; Tatsuyuki Kanamori; F Peter Guengerich
Journal:  J Biol Chem       Date:  2015-07-08       Impact factor: 5.157

4.  Thematic series: metals in biology.

Authors:  F Peter Guengerich
Journal:  J Biol Chem       Date:  2008-08-29       Impact factor: 5.157

5.  Thematic minireview series: metals in biology 2013.

Authors:  F Peter Guengerich
Journal:  J Biol Chem       Date:  2013-03-28       Impact factor: 5.157

6.  Thematic minireview series: metals in biology 2014.

Authors:  F Peter Guengerich
Journal:  J Biol Chem       Date:  2014-08-26       Impact factor: 5.157

7.  Introduction: Metals in Biology: METALS AT THE HOST-PATHOGEN INTERFACE.

Authors:  F Peter Guengerich
Journal:  J Biol Chem       Date:  2015-06-08       Impact factor: 5.157

8.  Next-generation sequencing reveals the biological significance of the N(2),3-ethenoguanine lesion in vivo.

Authors:  Shiou-chi Chang; Bogdan I Fedeles; Jie Wu; James C Delaney; Deyu Li; Linlin Zhao; Plamen P Christov; Emily Yau; Vipender Singh; Marco Jost; Catherine L Drennan; Lawrence J Marnett; Carmelo J Rizzo; Stuart S Levine; F Peter Guengerich; John M Essigmann
Journal:  Nucleic Acids Res       Date:  2015-04-02       Impact factor: 16.971

Review 9.  Unusual cytochrome p450 enzymes and reactions.

Authors:  F Peter Guengerich; Andrew W Munro
Journal:  J Biol Chem       Date:  2013-04-30       Impact factor: 5.157

10.  Viral AlkB proteins repair RNA damage by oxidative demethylation.

Authors:  Erwin van den Born; Marina V Omelchenko; Anders Bekkelund; Vibeke Leihne; Eugene V Koonin; Valerian V Dolja; Pål Ø Falnes
Journal:  Nucleic Acids Res       Date:  2008-08-21       Impact factor: 16.971

View more
  14 in total

1.  Introduction to Metals in Biology 2017: Iron transport, storage, and the ramifications.

Authors:  F Peter Guengerich
Journal:  J Biol Chem       Date:  2017-06-14       Impact factor: 5.157

Review 2.  Introduction to Metals in Biology 2018: Copper homeostasis and utilization in redox enzymes.

Authors:  F Peter Guengerich
Journal:  J Biol Chem       Date:  2018-02-07       Impact factor: 5.157

Review 3.  Metals in Biology 2016: Molecular Basis of Selection of Metals by Enzymes.

Authors:  F Peter Guengerich
Journal:  J Biol Chem       Date:  2016-07-26       Impact factor: 5.157

4.  Identification of Small-Molecule PHD2 Zinc Finger Inhibitors that Activate Hypoxia Inducible Factor.

Authors:  Patrick R Arsenault; Daisheng Song; Marian Bergkamp; Andrew M Ravaschiere; Bradleigh E Navalsky; Paul M Lieberman; Frank S Lee
Journal:  Chembiochem       Date:  2016-11-11       Impact factor: 3.164

Review 5.  Molecular mechanisms of flavonoids in melanin synthesis and the potential for the prevention and treatment of melanoma.

Authors:  Feng Liu-Smith; Frank L Meyskens
Journal:  Mol Nutr Food Res       Date:  2016-03-21       Impact factor: 5.914

Review 6.  m6A in the Signal Transduction Network.

Authors:  Ki-Hong Jang; Chloe R Heras; Gina Lee
Journal:  Mol Cells       Date:  2022-06-24       Impact factor: 4.250

7.  Fermentative Production of l-2-Hydroxyglutarate by Engineered Corynebacterium glutamicum via Pathway Extension of l-Lysine Biosynthesis.

Authors:  Carina Prell; Arthur Burgardt; Florian Meyer; Volker F Wendisch
Journal:  Front Bioeng Biotechnol       Date:  2021-01-27

8.  Iron Deficiency Reprograms Phosphorylation Signaling and Reduces O-GlcNAc Pathways in Neuronal Cells.

Authors:  Luke N Erber; Ang Luo; Yao Gong; Montana Beeson; Maolin Tu; Phu Tran; Yue Chen
Journal:  Nutrients       Date:  2021-01-08       Impact factor: 5.717

Review 9.  Demethyltransferase AlkBH1 substrate diversity and relationship to human diseases.

Authors:  Ying Zhang; Caiyan Wang
Journal:  Mol Biol Rep       Date:  2021-05-27       Impact factor: 2.316

Review 10.  Role of succinate dehydrogenase deficiency and oncometabolites in gastrointestinal stromal tumors.

Authors:  Yue Zhao; Fei Feng; Qing-Hong Guo; Yu-Ping Wang; Rui Zhao
Journal:  World J Gastroenterol       Date:  2020-09-14       Impact factor: 5.742

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.