| Literature DB >> 26151558 |
Caroline Measso do Bonfim1, João Simão Sobrinho2, Rodrigo Lacerda Nogueira3, Daniel Salgado Kupper3, Fabiana Cardoso Pereira Valera3, Maurício Lacerda Nogueira4, Luisa Lina Villa5, Paula Rahal1, Laura Sichero2.
Abstract
A significant proportion of recurrent respiratory papillomatosis (RRP) is caused by human papillomavirus type 6 (HPV-6). The long control region (LCR) contains cis-elements for regulation of transcription. Our aim was to characterize LCR HPV-6 variants in RRP cases, compare promoter activity of these isolates and search for cellular transcription factors (TFs) that could explain the differences observed. The complete LCR from 13 RRP was analyzed. Transcriptional activity of 5 variants was compared using luciferase assays. Differences in putative TFs binding sites among variants were revealed using the TRANSFAC database. Chromatin immunoprecipation (CHIP) and luciferase assays were used to evaluate TF binding and impact upon transcription, respectively. Juvenile-onset RRP cases harbored exclusively HPV-6vc related variants, whereas among adult-onset cases HPV-6a variants were more prevalent. The HPV-6vc reference was more transcriptionally active than the HPV-6a reference. Active FOXA1, ELF1 and GATA1 binding sites overlap variable nucleotide positions among isolates and influenced LCR activity. Furthermore, our results support a crucial role for ELF1 on transcriptional downregulation. We identified TFs implicated in the regulation of HPV-6 early gene expression. Many of these factors are mutated in cancer or are putative cancer biomarkers, and must be further studied.Entities:
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Year: 2015 PMID: 26151558 PMCID: PMC4494706 DOI: 10.1371/journal.pone.0132325
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Nucleotide sequence variability within the long control region (LCR) of human papillomavirus type 6 (HPV-6) molecular variants.
| Number of samples | HPV-6 LCRvariant | 7320 | 7350 | 7520 | 7626 | 7631 | 7633 | 7681 | 7762 | 7875 | 7919 | 7978 | 16 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 2 | 6a-ref | A | G | C | T | A | A | A | C | C | A | C | G |
| 1 | 6a-var1 | · | · | · | · | · | · | · | · | · | · | · | A |
| 1 | 6a-var2 | G | · | · | · | · | · | · | · | · | · | · | · |
| 6 | 6vc-ref | · | T | I1 | · | T | I2 | · | G | A | C | · | · |
| 1 | 6vc-var1 | · | T | I1 | G | T | I2 | · | G | A | C | · | · |
| 1 | 6vc-var2 | · | T | I1 | · | T | I2 | · | G | A | C | T | · |
| 1 | 6vc-var3 | · | T | I1 | · | T | I2 | G | G | A | C | · | · |
Genomic positions containing specific mutations are indicated vertically across the top. Genomic positions without mutations compared to the HPV-6a-ref sequence (·), Insertions (I): I1 = TTATTGTATATCTTGTTACA; I2 = C nucleotide insertion.
Clinical data of recurrent respiratory papillomatosis (RRP) patients harboring human papillomavirus type -6a and -6vc (HPV-6a and -6vc) related variants.
| HPV-6a-related | HPV-6vc-related | p-value | |
|---|---|---|---|
| JORRP | n = 0 | n = 7 | P = 0.02 |
| AORRP | n = 4 | n = 2 | |
| Mean Derkay score | 6.4 (CI 95%: 4.8 to 7.9) | 6.8 (CI 95%: 6.3 to 7.3) | P = 0.46 |
Abbreviations: JORRP, juvenile onset recurrent respiratory papillomatosis; AORRP adult onset recurrent respiratory papillomatosis.
a Fisher's exact test.
b T-test.
Fig 1Molecular variants of HPV-6 differ in early promoter activity.
(A) Transcriptional activity of human papillomavirus type (HPV-6) molecular variants isolated from recurrent respiratory papillomatosis (RRP) cases. Data are presented as mean ± SD relative values from 3 independent experiments. Transcriptional activity was normalized to that of HPV-6a-ref which was arbitrarily defined as the reference and set to value 1. Kruskal-Wallis and Tukey’s tests were used to compare LCR activity among the different HPV-6 molecular variants. Asterisks indicate isolates that showed statistically significant different transcriptional activities compared to the corresponding references (HPV-6a-ref or HPV-6vc-ref). (P<0.001). (B) Putative cellular transcription factors binding sites within the long control region (LCR) that differ among the different molecular variants of human papillomavirus (HPV) type 6 detected.
Fig 2Binding and activity of ELF1 and GATA1 to HPV-6a-ref and HPV-6a-var1.
Luciferase reporter assay for (A) ELF1 and (B) GATA1. (C) Amplification of LCR fragments following chromatin immunoprecipitation (ChIP) using primers surrounding nucleotide position 16 that differs among HPV-6a-ref and HPV-6a-var1 variants. Input-nonimmunoprecipated samples.
Fig 3Binding and activity of ELF1 and FOXA1 to HPV-6vc-ref and HPV-6vc-var1.
Luciferase reporter assay for (A) ELF1 and (B) FOXA1. (C) Amplification of LCR fragments following chromatin immunoprecipitation (ChIP) using primers surrounding nucleotide position 7626 that differs among HPV-vc-ref and HPV-6vc-var1 variants. Input-nonimmunoprecipated samples.
Fig 4Binding and activity of ELF1, GATA1 and FOXA1 to HPV-6a-ref and HPV-6vc-ref.
(A) Luciferase reporter assay for GATA1. Amplification of LCR fragments following chromatin immunoprecipitation (ChIP) using primers surrounding nucleotide position (B) 7631/33 and (C) 7762 and that differ between HPV-6a-ref and HPV-6vc-var1 variants. Input-nonimmunoprecipated samples.