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Literature DB >> 26149235

FunRich proteomics software analysis, let the fun begin!

Alberto Benito-Martin¹, Héctor Peinado^1,2.

Abstract

Protein MS analysis is the preferred method for unbiased protein identification. It is normally applied to a large number of both small-scale and high-throughput studies. However, user-friendly computational tools for protein analysis are still needed. In this issue, Mathivanan and colleagues (Proteomics 2015, 15, 2597-2601) report the development of FunRich software, an open-access software that facilitates the analysis of proteomics data, providing tools for functional enrichment and interaction network analysis of genes and proteins. FunRich is a reinterpretation of proteomic software, a standalone tool combining ease of use with customizable databases, free access, and graphical representations.

Keywords: Bioinformatics; Exosomes; Free access; FunRich; Software

Mesh：

Year: 2015 PMID： 26149235 DOI： 10.1002/pmic.201500260

Source DB: PubMed Journal: Proteomics ISSN： 1615-9853 Impact factor: 3.984

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Cited

27 in total

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Review 4. Characterization of potential driver mutations involved in human breast cancer by computational approaches.

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Review 5. Circulating microRNAs and Bioinformatics Tools to Discover Novel Diagnostic Biomarkers of Pediatric Diseases.

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6. A novel community driven software for functional enrichment analysis of extracellular vesicles data.

Authors: Mohashin Pathan; Shivakumar Keerthikumar; David Chisanga; Riccardo Alessandro; Ching-Seng Ang; Philip Askenase; Arsen O Batagov; Alberto Benito-Martin; Giovanni Camussi; Aled Clayton; Federica Collino; Dolores Di Vizio; Juan Manuel Falcon-Perez; Pedro Fonseca; Pamali Fonseka; Simona Fontana; Yong Song Gho; An Hendrix; Esther Nolte-'t Hoen; Nunzio Iraci; Kenneth Kastaniegaard; Thomas Kislinger; Joanna Kowal; Igor V Kurochkin; Tommaso Leonardi; Yaxuan Liang; Alicia Llorente; Taral R Lunavat; Sayantan Maji; Francesca Monteleone; Anders Øverbye; Theocharis Panaretakis; Tushar Patel; Héctor Peinado; Stefano Pluchino; Simona Principe; Goran Ronquist; Felix Royo; Susmita Sahoo; Cristiana Spinelli; Allan Stensballe; Clotilde Théry; Martijn J C van Herwijnen; Marca Wauben; Joanne L Welton; Kening Zhao; Suresh Mathivanan
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7. Feasibility of urinary extracellular vesicle proteome profiling using a robust and simple, clinically applicable isolation method.

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Journal: J Extracell Vesicles Date: 2017-04-28