Literature DB >> 26144862

Mechanism of Oxygen Activation in a Flavin-Dependent Monooxygenase: A Nearly Barrierless Formation of C4a-Hydroperoxyflavin via Proton-Coupled Electron Transfer.

Surawit Visitsatthawong1, Pirom Chenprakhon1, Pimchai Chaiyen1, Panida Surawatanawong1.   

Abstract

Understanding how flavin-dependent enzymes activate oxygen for their oxidation and oxygenation reactions is one of the most challenging issues in flavoenzymology. Density functional calculations and transient kinetics were performed to investigate the mechanism of oxygen activation in the oxygenase component (C2) of p-hydroxyphenylacetate 3-hydroxylase (HPAH). We found that the protonation of dioxygen by His396 via a proton-coupled electron transfer mechanism is the key step in the formation of the triplet diradical complex of flavin semiquinone and (•)OOH. This complex undergoes intersystem crossing to form the open-shell singlet diradical complex before it forms the closed-shell singlet C4a-hydroperoxyflavin intermediate (C4aOOH). Notably, density functional calculations indicated that the formation of C4aOOH is nearly barrierless, possibly facilitated by the active site arrangement in which His396 positions the proximal oxygen of the (•)OOH in an optimum position to directly attack the C4a atom of the isoalloxazine ring. The nearly barrierless formation of C4aOOH agrees well with the experimental results; based on transient kinetics and Eyring plot analyses, the enthalpy of activation for the formation of C4aOOH is only 1.4 kcal/mol and the formation of C4aOOH by C2 is fast (∼10(6) M(-1) s(-1) at 4 °C). The calculations identified Ser171 as the key residue that stabilizes C4aOOH by accepting a hydrogen bond from the H(N5) of the isoalloxazine ring. Both Ser171 and Trp112 facilitate H2O2 elimination by donating hydrogen bonds to the proximal oxygen of the OOH moiety during the proton transfer. According to our combined theoretical and experimental studies, the existence of a positively charged general acid at the position optimized for facilitating the proton-coupled electron transfer has emerged as an important catalytic feature for the oxygen activation process in flavin-dependent enzymes.

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Year:  2015        PMID: 26144862     DOI: 10.1021/jacs.5b04328

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  11 in total

1.  Kinetic Mechanism of the Dechlorinating Flavin-dependent Monooxygenase HadA.

Authors:  Panu Pimviriyakul; Kittisak Thotsaporn; Jeerus Sucharitakul; Pimchai Chaiyen
Journal:  J Biol Chem       Date:  2017-02-03       Impact factor: 5.157

Review 2.  Monooxygenation of aromatic compounds by flavin-dependent monooxygenases.

Authors:  Pirom Chenprakhon; Thanyaporn Wongnate; Pimchai Chaiyen
Journal:  Protein Sci       Date:  2019-01       Impact factor: 6.725

3.  A complete bioconversion cascade for dehalogenation and denitration by bacterial flavin-dependent enzymes.

Authors:  Panu Pimviriyakul; Pimchai Chaiyen
Journal:  J Biol Chem       Date:  2018-10-03       Impact factor: 5.157

4.  Tuning of pKa values activates substrates in flavin-dependent aromatic hydroxylases.

Authors:  Warintra Pitsawong; Pirom Chenprakhon; Taweesak Dhammaraj; Dheeradhach Medhanavyn; Jeerus Sucharitakul; Chanakan Tongsook; Willem J H van Berkel; Pimchai Chaiyen; Anne-Frances Miller
Journal:  J Biol Chem       Date:  2020-02-02       Impact factor: 5.157

5.  How a cofactor-free protein environment lowers the barrier to O2 reactivity.

Authors:  Melodie M Machovina; Emerald S Ellis; Thomas J Carney; Fikile R Brushett; Jennifer L DuBois
Journal:  J Biol Chem       Date:  2019-01-02       Impact factor: 5.157

6.  Crystal structures of TdsC, a dibenzothiophene monooxygenase from the thermophile Paenibacillus sp. A11-2, reveal potential for expanding its substrate selectivity.

Authors:  Tomoya Hino; Haruka Hamamoto; Hirokazu Suzuki; Hisashi Yagi; Takashi Ohshiro; Shingo Nagano
Journal:  J Biol Chem       Date:  2017-08-02       Impact factor: 5.157

7.  Refining the reaction mechanism of O2 towards its co-substrate in cofactor-free dioxygenases.

Authors:  Pedro J Silva
Journal:  PeerJ       Date:  2016-12-20       Impact factor: 2.984

Review 8.  Beyond ferryl-mediated hydroxylation: 40 years of the rebound mechanism and C-H activation.

Authors:  Xiongyi Huang; John T Groves
Journal:  J Biol Inorg Chem       Date:  2016-12-01       Impact factor: 3.358

9.  Oxidative dehalogenation and denitration by a flavin-dependent monooxygenase is controlled by substrate deprotonation.

Authors:  Panu Pimviriyakul; Panida Surawatanawong; Pimchai Chaiyen
Journal:  Chem Sci       Date:  2018-08-08       Impact factor: 9.825

Review 10.  Flavinium Catalysed Photooxidation: Detection and Characterization of Elusive Peroxyflavinium Intermediates.

Authors:  Jan Zelenka; Radek Cibulka; Jana Roithová
Journal:  Angew Chem Int Ed Engl       Date:  2019-08-23       Impact factor: 15.336

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