Literature DB >> 26143915

S-SAD phasing of monoclinic histidine kinase from Brucella abortus combining data from multiple crystals and orientations: an example of data-collection strategy and a posteriori analysis of different data combinations.

Sebastián Klinke1, Nicolas Foos2, Jimena J Rinaldi1, Gastón Paris1, Fernando A Goldbaum1, Pierre Legrand2, Beatriz G Guimarães2, Andrew Thompson2.   

Abstract

The histidine kinase (HK) domain belonging to the light-oxygen-voltage histidine kinase (LOV-HK) from Brucella abortus is a member of the HWE family, for which no structural information is available, and has low sequence identity (20%) to the closest HK present in the PDB. The `off-edge' S-SAD method in macromolecular X-ray crystallography was used to solve the structure of the HK domain from LOV-HK at low resolution from crystals in a low-symmetry space group (P21) and with four copies in the asymmetric unit (∼108 kDa). Data were collected both from multiple crystals (diffraction limit varying from 2.90 to 3.25 Å) and from multiple orientations of the same crystal, using the κ-geometry goniostat on SOLEIL beamline PROXIMA 1, to obtain `true redundancy'. Data from three different crystals were combined for structure determination. An optimized HK construct bearing a shorter cloning artifact yielded crystals that diffracted X-rays to 2.51 Å resolution and that were used for final refinement of the model. Moreover, a thorough a posteriori analysis using several different combinations of data sets allowed us to investigate the impact of the data-collection strategy on the success of the structure determination.

Entities:  

Keywords:  HWE family; anomalous signal; experimental phasing; two-component system

Mesh:

Substances:

Year:  2015        PMID: 26143915     DOI: 10.1107/S1399004715007622

Source DB:  PubMed          Journal:  Acta Crystallogr D Biol Crystallogr        ISSN: 0907-4449


  4 in total

1.  Data-collection strategy for challenging native SAD phasing.

Authors:  Vincent Olieric; Tobias Weinert; Aaron D Finke; Carolin Anders; Dianfan Li; Natacha Olieric; Camelia N Borca; Michel O Steinmetz; Martin Caffrey; Martin Jinek; Meitian Wang
Journal:  Acta Crystallogr D Struct Biol       Date:  2016-03-01       Impact factor: 7.652

2.  MXCuBE2: the dawn of MXCuBE Collaboration.

Authors:  Marcus Oscarsson; Antonia Beteva; David Flot; Elspeth Gordon; Matias Guijarro; Gordon Leonard; Sean McSweeney; Stephanie Monaco; Christoph Mueller-Dieckmann; Max Nanao; Didier Nurizzo; Alexander N Popov; David von Stetten; Olof Svensson; Vicente Rey-Bakaikoa; Idrissou Chado; Leonard M G Chavas; Laurent Gadea; Patrick Gourhant; Tatiana Isabet; Pierre Legrand; Martin Savko; Serena Sirigu; William Shepard; Andrew Thompson; Uwe Mueller; Jie Nan; Mikel Eguiraun; Fredrick Bolmsten; Alberto Nardella; Antonio Milàn-Otero; Marjolein Thunnissen; Michael Hellmig; Alexandra Kastner; Lukas Schmuckermaier; Martin Gerlach; Christian Feiler; Manfred S Weiss; Matthew W Bowler; Alexandre Gobbo; Gergely Papp; Jeremy Sinoir; Andrew A McCarthy; Ivars Karpics; Marina Nikolova; Gleb Bourenkov; Thomas Schneider; Jordi Andreu; Guifré Cuní; Judith Juanhuix; Roeland Boer; Rasmus Fogh; Peter Keller; Claus Flensburg; Wlodek Paciorek; Clemens Vonrhein; Gerard Bricogne; Daniele de Sanctis
Journal:  J Synchrotron Radiat       Date:  2019-02-22       Impact factor: 2.616

3.  Application of sulfur SAD to small crystals with a large asymmetric unit and anomalous substructure.

Authors:  Tung Chung Mou; Baisen Zeng; Tzanko I Doukov; Stephen R Sprang
Journal:  Acta Crystallogr D Struct Biol       Date:  2022-07-14       Impact factor: 5.699

4.  Crystallization and initial X-ray diffraction analysis of the multi-domain Brucella blue light-activated histidine kinase LOV-HK in its illuminated state.

Authors:  Jimena Rinaldi; Ignacio Fernández; Lucía M Poth; William E Shepard; Martin Savko; Fernando A Goldbaum; Sebastián Klinke
Journal:  Biochem Biophys Rep       Date:  2018-09-26
  4 in total

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