Literature DB >> 26140198

Identification of ungulates used in a traditional Chinese medicine with DNA barcoding technology.

Jing Chen1, Zhigang Jiang2, Chunlin Li3, Xiaoge Ping4, Shaopeng Cui1, Songhua Tang4, Hongjun Chu5, Binwan Liu6.   

Abstract

Horns of Saiga antelope (Saiga tatarica) have always been an ingredient of "Lingyangjiao", a traditional Chinese medicine (TCM). Persistent hunting for Saiga antelope has already threatened the survival of critical endangered populations in wild. To control the growing pressure, CITES and Chinese government have legislated for monitoring the trade of Saiga horns. However, similar ungulate horns are difficult to identify by their morphological characteristics, which has impeded the law enforcement. Besides Saiga antelope, other seven ungulate species which have similar horns are also sold and marked as "Lingyangjiao" in TCM markets to offset shortage of Saiga antelope horns. Such species are Gazella subgutturosa, Pantholops hodgsonii, Procapra picticaudata, Procapra gutturosa, Procapra przewalskii, Capra hircus, and Ovis aries. Our study aimed at implementing DNA barcoding technology to diagnose Saiga horns and the substitutes. We successfully extracted genomic DNA from horn samples. We recovered COI sequences of 644 bp with specific primers and 349 bp with nested PCR primers designed for degraded horn samples. The mean interspecific genetic distance of data set of the 644-bp full barcodes and the 349-bp mini-barcodes was 14.96% and 15.38%, respectively, and the mean intraspecific distance was 0.24% and 0.20%, respectively. Each species formed independent clades in neighbor-joining (NJ) phylogenetic tree of the two data sets with >99% supporting values, except P. gutturosa and P. przewalskii. The deep genetic distances gap and clear species clades in NJ tree of either full barcodes or mini-barcodes suggest that barcoding technology is an effective tool to diagnose Saiga horns and their substitutes. Barcoding diagnosis protocol developed here will simplify diagnosis of "Lingyangjiao" species and will facilitate conservation of endangered ungulates involved in TCM "Lingyangjiao" markets, especially the Saiga antelope.

Entities:  

Keywords:  Conservation genetics; DNA barcode; DNA identification; illegal trade; traditional Chinese medicines; wildlife forensics

Year:  2015        PMID: 26140198      PMCID: PMC4485963          DOI: 10.1002/ece3.1457

Source DB:  PubMed          Journal:  Ecol Evol        ISSN: 2045-7758            Impact factor:   2.912


  21 in total

1.  Biological identifications through DNA barcodes.

Authors:  Paul D N Hebert; Alina Cywinska; Shelley L Ball; Jeremy R deWaard
Journal:  Proc Biol Sci       Date:  2003-02-07       Impact factor: 5.349

2.  Conservation: Reproductive collapse in saiga antelope harems.

Authors:  E J Milner-Gulland; O M Bukreeva; T Coulson; A A Lushchekina; M V Kholodova; A B Bekenov; I A Grachev
Journal:  Nature       Date:  2003-03-13       Impact factor: 49.962

3.  DNA mini-barcoding: an approach for forensic identification of some endangered Indian snake species.

Authors:  Bhawna Dubey; P R Meganathan; Ikramul Haque
Journal:  Forensic Sci Int Genet       Date:  2010-04-07       Impact factor: 4.882

4.  Forensic identification of CITES protected slimming cactus (Hoodia) using DNA barcoding.

Authors:  Gerard Gathier; Timotheus van der Niet; Tamara Peelen; Rogier R van Vugt; Marcel C M Eurlings; Barbara Gravendeel
Journal:  J Forensic Sci       Date:  2013-07-18       Impact factor: 1.832

5.  Multiple sequence alignment using ClustalW and ClustalX.

Authors:  Julie D Thompson; Toby J Gibson; Des G Higgins
Journal:  Curr Protoc Bioinformatics       Date:  2002-08

6.  Taxon-specific PCR for DNA barcoding arthropod prey in bat faeces.

Authors:  Matt R K Zeale; Roger K Butlin; Gary L A Barker; David C Lees; Gareth Jones
Journal:  Mol Ecol Resour       Date:  2010-09-26       Impact factor: 7.090

7.  Current issues in species identification for forensic science and the validity of using the cytochrome oxidase I (COI) gene.

Authors:  Linzi Wilson-Wilde; Janette Norman; James Robertson; Stephen Sarre; Arthur Georges
Journal:  Forensic Sci Med Pathol       Date:  2010-06-20       Impact factor: 2.007

8.  Effect of anthropogenic landscape features on population genetic differentiation of Przewalski's gazelle: main role of human settlement.

Authors:  Ji Yang; Zhigang Jiang; Yan Zeng; Mardan Turghan; Hongxia Fang; Chunwang Li
Journal:  PLoS One       Date:  2011-05-20       Impact factor: 3.240

9.  Potential efficacy of mitochondrial genes for animal DNA barcoding: a case study using eutherian mammals.

Authors:  Arong Luo; Aibing Zhang; Simon Yw Ho; Weijun Xu; Yanzhou Zhang; Weifeng Shi; Stephen L Cameron; Chaodong Zhu
Journal:  BMC Genomics       Date:  2011-01-28       Impact factor: 3.969

10.  bold: The Barcode of Life Data System (http://www.barcodinglife.org).

Authors:  Sujeevan Ratnasingham; Paul D N Hebert
Journal:  Mol Ecol Notes       Date:  2007-05-01
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  2 in total

Review 1.  DNA Barcoding for the Identification and Authentication of Animal Species in Traditional Medicine.

Authors:  Fan Yang; Fei Ding; Hong Chen; Mingqi He; Shixin Zhu; Xin Ma; Li Jiang; Haifeng Li
Journal:  Evid Based Complement Alternat Med       Date:  2018-04-22       Impact factor: 2.629

2.  Combination of Multiple Microsatellite Analysis and Genome-Wide SNP Genotyping Helps to Solve Wildlife Crime: A Case Study of Poaching of a Caucasian tur (Capra caucasica) in Russian Mountain National Park.

Authors:  Andrey Rodionov; Tatiana Deniskova; Arsen Dotsev; Valeria Volkova; Sergey Petrov; Veronika Kharzinova; Olga Koshkina; Alexandra Abdelmanova; Anastasia Solovieva; Alexey Shakhin; Nikolay Bardukov; Natalia Zinovieva
Journal:  Animals (Basel)       Date:  2021-11-30       Impact factor: 2.752

  2 in total

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