Literature DB >> 26126447

5-Hydroxymethylcytosine Profiling in Human DNA.

John P Thomson1, Colm E Nestor2, Richard R Meehan3.   

Abstract

Since its "re-discovery" in 2009, there has been significant interest in defining the genome-wide distribution of DNA marked by 5-hydroxymethylation at cytosine bases (5hmC). In recent years, technological advances have resulted in a multitude of unique strategies to map 5hmC across the human genome. Here we discuss the wide range of approaches available to map this modification and describe in detail the affinity based methods which result in the enrichment of 5hmC marked DNA for downstream analysis.

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Keywords:  5-hydroxymethylcytosine; 5hmC; 5mC; DNA immunoprecipitation and enrichment; Epigenetics; HmeDIP

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Year:  2017        PMID: 26126447     DOI: 10.1007/7651_2015_268

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  2 in total

1.  bZIP Dimers CREB1, ATF2, Zta, ATF3|cJun, and cFos|cJun Prefer to Bind to Some Double-Stranded DNA Sequences Containing 5-Formylcytosine and 5-Carboxylcytosine.

Authors:  Sreejana Ray; Desiree Tillo; Aniekanabasi Ufot; Nima Assad; Stewart Durell; Charles Vinson
Journal:  Biochemistry       Date:  2020-09-20       Impact factor: 3.162

2.  Genome-wide 5-Hydroxymethylcytosine Profiling Analysis Identifies MAP7D1 as A Novel Regulator of Lymph Node Metastasis in Breast Cancer.

Authors:  Shuang-Ling Wu; Xiaoyi Zhang; Mengqi Chang; Changcai Huang; Jun Qian; Qing Li; Fang Yuan; Lihong Sun; Xinmiao Yu; Xinmiao Cui; Jiayi Jiang; Mengyao Cui; Ye Liu; Huan-Wen Wu; Zhi-Yong Liang; Xiaoyue Wang; Yamei Niu; Wei-Min Tong; Feng Jin
Journal:  Genomics Proteomics Bioinformatics       Date:  2021-03-11       Impact factor: 7.691

  2 in total

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