Literature DB >> 26125618

Correction: Genomic Selection and Association Mapping in Rice (Oryza sativa): Effect of Trait Genetic Architecture, Training Population Composition, Marker Number and Statistical Model on Accuracy of Rice Genomic Selection in Elite, Tropical Rice Breeding Lines.

Jennifer Spindel, Hasina Begum, Deniz Akdemir, Parminder Virk, Bertrand Collard, Edilberto Redoña, Gary Atlin, Jean-Luc Jannink, Susan R McCouch.   

Abstract

Entities:  

Year:  2015        PMID: 26125618      PMCID: PMC4488320          DOI: 10.1371/journal.pgen.1005350

Source DB:  PubMed          Journal:  PLoS Genet        ISSN: 1553-7390            Impact factor:   5.917


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Fig 1

Mean accuracies of cross-validation for prediction of grain yield (Kg/ha) (top row), flowering time (days to 50% flowering) (middle row), and plant height (cm) (bottom row) in the 2012 dry season, using 10 selections of SNP subsets either distributed evenly throughout the genome (left column) or chosen at random (right column) and five different statistical methods, error bars constructed using 1 standard error from the mean.

The training population consisted of data from years 2009–2011, both seasons per year.

Mean accuracies of cross-validation for prediction of grain yield (Kg/ha) (top row), flowering time (days to 50% flowering) (middle row), and plant height (cm) (bottom row) in the 2012 dry season, using 10 selections of SNP subsets either distributed evenly throughout the genome (left column) or chosen at random (right column) and five different statistical methods, error bars constructed using 1 standard error from the mean.

The training population consisted of data from years 2009–2011, both seasons per year.
  1 in total

1.  Genomic selection and association mapping in rice (Oryza sativa): effect of trait genetic architecture, training population composition, marker number and statistical model on accuracy of rice genomic selection in elite, tropical rice breeding lines.

Authors:  Jennifer Spindel; Hasina Begum; Deniz Akdemir; Parminder Virk; Bertrand Collard; Edilberto Redoña; Gary Atlin; Jean-Luc Jannink; Susan R McCouch
Journal:  PLoS Genet       Date:  2015-02-17       Impact factor: 5.917

  1 in total
  19 in total

Review 1.  Systems-based rice improvement approaches for sustainable food and nutritional security.

Authors:  Vivek Verma; Bhushan Vishal; Ajay Kohli; Prakash P Kumar
Journal:  Plant Cell Rep       Date:  2021-09-30       Impact factor: 4.570

Review 2.  Rice grain nutritional traits and their enhancement using relevant genes and QTLs through advanced approaches.

Authors:  Anumalla Mahender; Annamalai Anandan; Sharat Kumar Pradhan; Elssa Pandit
Journal:  Springerplus       Date:  2016-12-09

3.  Association mapping of resistance to rice blast in upland field conditions.

Authors:  Louis-Marie Raboin; Elsa Ballini; Didier Tharreau; Alain Ramanantsoanirina; Julien Frouin; Brigitte Courtois; Nourollah Ahmadi
Journal:  Rice (N Y)       Date:  2016-11-09       Impact factor: 4.783

4.  Genome-wide association mapping and genomic prediction for CBSD resistance in Manihot esculenta.

Authors:  Siraj Ismail Kayondo; Dunia Pino Del Carpio; Roberto Lozano; Alfred Ozimati; Marnin Wolfe; Yona Baguma; Vernon Gracen; Samuel Offei; Morag Ferguson; Robert Kawuki; Jean-Luc Jannink
Journal:  Sci Rep       Date:  2018-01-24       Impact factor: 4.379

5.  Evaluation of methods and marker Systems in Genomic Selection of oil palm (Elaeis guineensis Jacq.).

Authors:  Qi Bin Kwong; Chee Keng Teh; Ai Ling Ong; Fook Tim Chew; Sean Mayes; Harikrishna Kulaveerasingam; Martti Tammi; Suat Hui Yeoh; David Ross Appleton; Jennifer Ann Harikrishna
Journal:  BMC Genet       Date:  2017-12-11       Impact factor: 2.797

6.  Genomic Selection in Commercial Perennial Crops: Applicability and Improvement in Oil Palm (Elaeis guineensis Jacq.).

Authors:  Qi Bin Kwong; Ai Ling Ong; Chee Keng Teh; Fook Tim Chew; Martti Tammi; Sean Mayes; Harikrishna Kulaveerasingam; Suat Hui Yeoh; Jennifer Ann Harikrishna; David Ross Appleton
Journal:  Sci Rep       Date:  2017-06-06       Impact factor: 4.379

7.  Breeding Jatropha curcas by genomic selection: A pilot assessment of the accuracy of predictive models.

Authors:  Leonardo de Azevedo Peixoto; Bruno Galvêas Laviola; Alexandre Alonso Alves; Tatiana Barbosa Rosado; Leonardo Lopes Bhering
Journal:  PLoS One       Date:  2017-03-15       Impact factor: 3.240

Review 8.  Genotyping-by-sequencing approaches to characterize crop genomes: choosing the right tool for the right application.

Authors:  Armin Scheben; Jacqueline Batley; David Edwards
Journal:  Plant Biotechnol J       Date:  2017-02       Impact factor: 9.803

9.  Potential of Genomic Selection in Mass Selection Breeding of an Allogamous Crop: An Empirical Study to Increase Yield of Common Buckwheat.

Authors:  Shiori Yabe; Takashi Hara; Mariko Ueno; Hiroyuki Enoki; Tatsuro Kimura; Satoru Nishimura; Yasuo Yasui; Ryo Ohsawa; Hiroyoshi Iwata
Journal:  Front Plant Sci       Date:  2018-03-21       Impact factor: 5.753

10.  Historical Datasets Support Genomic Selection Models for the Prediction of Cotton Fiber Quality Phenotypes Across Multiple Environments.

Authors:  Washington Gapare; Shiming Liu; Warren Conaty; Qian-Hao Zhu; Vanessa Gillespie; Danny Llewellyn; Warwick Stiller; Iain Wilson
Journal:  G3 (Bethesda)       Date:  2018-05-04       Impact factor: 3.154

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