Literature DB >> 26119122

The complete chloroplast genome sequence of Amentotaxus argotaenia (Taxaceae).

Jia Li1,2, Lei Gao1, Ke Tao1,2, Yingjuan Su3,4, Ting Wang1,5.   

Abstract

The complete chloroplast genome sequence of Amentotaxus argotaenia was determined in this study. The genome is 136 657 bp in length and lacks one inverted repeat region. The overall GC content of the genome is 35.85% (protein-coding genes, 36.90%; tRNA genes, 53.31%; rRNA genes, 52.99%; introns, 36.10%; intergenic spacers, 31.03%). The A. argotaenia chloroplast genome contains 118 unique genes, including 83 protein-coding genes, 31 tRNA genes, and four rRNA genes. Ten protein-coding genes and six tRNA genes have one intron, while ycf3 contains two. The coding regions occupy 60.27% of the genome length and the gene density is estimated to be 0.88 genes/kb. A maximum likelihood phylogenetic analysis suggested that Amentotaxus is sister to Taxus within the Taxaceae family.

Entities:  

Keywords:  Amentotaxus argotaenia; Taxaceae; chloroplast genome

Mesh:

Year:  2015        PMID: 26119122     DOI: 10.3109/19401736.2015.1060439

Source DB:  PubMed          Journal:  Mitochondrial DNA A DNA Mapp Seq Anal        ISSN: 2470-1394            Impact factor:   1.514


  2 in total

1.  The complete chloroplast genome sequence of Amentotaxus yunnanensis (Taxaceae).

Authors:  Jun Zhang; Ze-Peng Cao; Shuo Li; Meng-Meng Liu; Xiao-Wei Huo
Journal:  Mitochondrial DNA B Resour       Date:  2019-07-12       Impact factor: 0.658

2.  Comparative Genomic Analysis Reveals the Mechanism Driving the Diversification of Plastomic Structure in Taxaceae Species.

Authors:  Yue Zhang; Yang Xu; Hao Chen; Liuyang Wang; Kangquan Yin; Fang K Du
Journal:  Front Genet       Date:  2020-01-14       Impact factor: 4.599

  2 in total

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