Literature DB >> 26119115

The complete mitochondrial genome of the killifish Orestias sp. (Cyprinodontiformes, Cyprinodontidae) from the high Andean range.

Claudio Quezada-Romegialli1, Claudia Jimena Guerrero2,3, David Véliz2,4, Irma Vila2.   

Abstract

The killifish genus Orestias is endemic to freshwater ecosystems in the High Andes of Peru, Bolivia and Chile. Phylogenetic and phylogeographic studies with partial mitochondrial genes have failed to resolve relationship among species, needing more comprehensive approaches. In this study, we described the complete mitochondrial genome of Orestias sp. from Lirima, northern Chile, with the aim to provide useful data for phylogenetic purposes and species delimitation. The mitochondrial genome was assembled with 2.6 million of reads obtained through an Ion Torrent (chip 318) sequencer. The circular sequence of 16,617 bp showed the following nucleotide composition: A, 26.7%, C, 27.1%, G, 17.0%, and T, 29.2%. Gene composition and structure were similar to other fish sequences available, and comprised 13 protein-coding genes, 12S and 16S rRNA, 22 tRNA genes, and a control region.

Entities:  

Keywords:  Altiplano; NGS; freshwater fish; next-generation sequencing

Mesh:

Year:  2015        PMID: 26119115     DOI: 10.3109/19401736.2015.1053119

Source DB:  PubMed          Journal:  Mitochondrial DNA A DNA Mapp Seq Anal        ISSN: 2470-1394            Impact factor:   1.514


  2 in total

1.  Mitochondrial genome of Pteronotus personatus (Chiroptera: Mormoopidae): comparison with selected bats and phylogenetic considerations.

Authors:  Ricardo López-Wilchis; Miguel Ángel Del Río-Portilla; Luis Manuel Guevara-Chumacero
Journal:  Genetica       Date:  2016-12-19       Impact factor: 1.082

2.  Morphological and taxonomic descriptions of a new genus and species of killifishes (Teleostei: Cyprinodontiformes) from the high Andes of northern Chile.

Authors:  Gloria Arratia; Irma Vila; Natalia Lam; Claudia Jimena Guerrero; Claudio Quezada-Romegialli
Journal:  PLoS One       Date:  2017-08-08       Impact factor: 3.240

  2 in total

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