Literature DB >> 26117536

The NEIL glycosylases remove oxidized guanine lesions from telomeric and promoter quadruplex DNA structures.

Jia Zhou, Aaron M Fleming, April M Averill, Cynthia J Burrows, Susan S Wallace.   

Abstract

Entities:  

Year:  2015        PMID: 26117536      PMCID: PMC4538843          DOI: 10.1093/nar/gkv673

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


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Nucl. Acids Res. 43 (8): 4039–4054. doi: 10.1093/nar/gkv252 The authors wish to draw attention to an error in their published article. In Figure 1C, the red structure in the third G-quartet should be guanidinohydantoin (Gh) instead of spiroiminodihydantoin (Sp). A new Figure 1 with Gh in G-quartet is included below.
Figure 1.

Folding, CD spectra and guanine oxidation of quadruplex DNA. (A) Folding of parallel propeller, antiparallel basket and hybrid (type 2) quadruplex DNA. (B) Representative CD spectrum of each quadruplex DNA. In a parallel quadruplex, all four strands point in one direction and the neighboring strands are connected with double reversal loops. The CD spectrum of a parallel quadruplex features a 265 nm maximum and a 240 nm minimum. The basket antiparallel quadruplex DNA has neighboring strands running in opposite directions and connected with two lateral loops and a diagonal loop. This structure features a 295 nm maximum and a 265 nm minimum. A hybrid (type 2) quadruplex has mixed strand directionalities and presents a 295 nm maximum, a 270 nm shoulder and a 235 nm minimum (see (46)). (C) Chemical structures of guanine (G), 8-oxoguanine (8-oxoG) and guanidinohydantoin (Gh) in the context of a G quartet.

Folding, CD spectra and guanine oxidation of quadruplex DNA. (A) Folding of parallel propeller, antiparallel basket and hybrid (type 2) quadruplex DNA. (B) Representative CD spectrum of each quadruplex DNA. In a parallel quadruplex, all four strands point in one direction and the neighboring strands are connected with double reversal loops. The CD spectrum of a parallel quadruplex features a 265 nm maximum and a 240 nm minimum. The basket antiparallel quadruplex DNA has neighboring strands running in opposite directions and connected with two lateral loops and a diagonal loop. This structure features a 295 nm maximum and a 265 nm minimum. A hybrid (type 2) quadruplex has mixed strand directionalities and presents a 295 nm maximum, a 270 nm shoulder and a 235 nm minimum (see (46)). (C) Chemical structures of guanine (G), 8-oxoguanine (8-oxoG) and guanidinohydantoin (Gh) in the context of a G quartet. The findings and conclusion of the article remain valid. The authors apologise to readers for this error and any inconvenience caused.
  6 in total

Review 1.  Repair of oxidatively induced DNA damage by DNA glycosylases: Mechanisms of action, substrate specificities and excision kinetics.

Authors:  Miral Dizdaroglu; Erdem Coskun; Pawel Jaruga
Journal:  Mutat Res Rev Mutat Res       Date:  2017-02-16       Impact factor: 5.657

Review 2.  DNA excision repair at telomeres.

Authors:  Pingping Jia; Chengtao Her; Weihang Chai
Journal:  DNA Repair (Amst)       Date:  2015-09-16

3.  Direct hOGG1-Myc interactions inhibit hOGG1 catalytic activity and recruit Myc to its promoters under oxidative stress.

Authors:  Disha M Bangalore; Ingrid Tessmer
Journal:  Nucleic Acids Res       Date:  2022-10-14       Impact factor: 19.160

4.  Endogenous oxidized DNA bases and APE1 regulate the formation of G-quadruplex structures in the genome.

Authors:  Shrabasti Roychoudhury; Suravi Pramanik; Hannah L Harris; Mason Tarpley; Aniruddha Sarkar; Gaelle Spagnol; Paul L Sorgen; Dipanjan Chowdhury; Vimla Band; David Klinkebiel; Kishor K Bhakat
Journal:  Proc Natl Acad Sci U S A       Date:  2020-05-13       Impact factor: 11.205

Review 5.  Naphthalene Diimides as Multimodal G-Quadruplex-Selective Ligands.

Authors:  Valentina Pirota; Matteo Nadai; Filippo Doria; Sara N Richter
Journal:  Molecules       Date:  2019-01-24       Impact factor: 4.411

Review 6.  Mechanisms of DNA Replication and Repair: Insights from the Study of G-Quadruplexes.

Authors:  Tracy M Bryan
Journal:  Molecules       Date:  2019-09-22       Impact factor: 4.411

  6 in total

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