Literature DB >> 26115965

A deeper look into Comet--implementation and features.

Jimmy K Eng1, Michael R Hoopmann2, Tahmina A Jahan3, Jarrett D Egertson3, William S Noble3, Michael J MacCoss3.   

Abstract

The Comet database search software was initially released as an open source project in late 2012. Prior to that, Comet existed as the University of Washington's academic version of the SEQUEST database search tool. Despite its availability and widespread use over the years, some details about its implementation have not been previously disseminated or are not well understood. We address a few of these details in depth and highlight new features available in the latest release. Comet is freely available for download at http://comet-ms.sourceforge.net or it can be accessed as a component of a number of larger software projects into which it has been incorporated. Graphical Abstract ᅟ.

Entities:  

Keywords:  Comet; Database search; MS/MS

Mesh：

Year:  2015        PMID： 26115965      PMCID： PMC4607604          DOI： 10.1007/s13361-015-1179-x

Source DB:  PubMed          Journal:  J Am Soc Mass Spectrom        ISSN： 1044-0305            Impact factor:   3.109


  26 in total

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Authors:  Christopher Y Park; Aaron A Klammer; Lukas Käll; Michael J MacCoss; William S Noble
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Review 4.  Protein identification using Sorcerer 2 and SEQUEST.

Authors:  Deborah H Lundgren; Harryl Martinez; Michael E Wright; David K Han
Journal:  Curr Protoc Bioinformatics       Date:  2009-12

5.  PeptideShaker enables reanalysis of MS-derived proteomics data sets.

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6.  Computing exact p-values for a cross-correlation shotgun proteomics score function.

Authors:  J Jeffry Howbert; William Stafford Noble
Journal:  Mol Cell Proteomics       Date:  2014-06-02       Impact factor: 5.911

7.  MacroSEQUEST: efficient candidate-centric searching and high-resolution correlation analysis for large-scale proteomics data sets.

Authors:  Brendan K Faherty; Scott A Gerber
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Authors:  Alexey V Nefedov; Indranil Mitra; Allan R Brasier; Rovshan G Sadygov
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Review 9.  N-terminal acetyltransferases and sequence requirements for N-terminal acetylation of eukaryotic proteins.

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  63 in total

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