Literature DB >> 26115447

Near-infrared fluorescent proteins engineered from bacterial phytochromes.

Daria M Shcherbakova1, Mikhail Baloban1, Vladislav V Verkhusha2.   

Abstract

Near-infrared fluorescent proteins (NIR FPs), photoactivatable NIR FPs and NIR reporters of protein-protein interactions developed from bacterial phytochrome photoreceptors (BphPs) have advanced non-invasive deep-tissue imaging. Here we provide a brief guide to the BphP-derived NIR probes with an emphasis on their in vivo applications. We describe phenotypes of NIR FPs and their photochemical and intracellular properties. We discuss NIR FP applications for imaging of various cell types, tissues and animal models in basic and translational research. In this discussion, we focus on NIR FPs that efficiently incorporate endogenous biliverdin chromophore and therefore can be used as straightforward as GFP-like proteins. We also overview a usage of NIR FPs in different imaging platforms, from planar epifluorescence to tomographic and photoacoustic technologies.
Copyright © 2015 Elsevier Ltd. All rights reserved.

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Year:  2015        PMID: 26115447      PMCID: PMC4553112          DOI: 10.1016/j.cbpa.2015.06.005

Source DB:  PubMed          Journal:  Curr Opin Chem Biol        ISSN: 1367-5931            Impact factor:   8.822


  50 in total

1.  Deep-tissue photoacoustic tomography of a genetically encoded near-infrared fluorescent probe.

Authors:  Grigory S Filonov; Arie Krumholz; Jun Xia; Junjie Yao; Lihong V Wang; Vladislav V Verkhusha
Journal:  Angew Chem Int Ed Engl       Date:  2011-12-23       Impact factor: 15.336

2.  In vivo tomographic imaging of deep-seated cancer using fluorescence lifetime contrast.

Authors:  William L Rice; Daria M Shcherbakova; Vladislav V Verkhusha; Anand T N Kumar
Journal:  Cancer Res       Date:  2015-02-10       Impact factor: 12.701

3.  A knot in the protein structure - probing the near-infrared fluorescent protein iRFP designed from a bacterial phytochrome.

Authors:  Olesya V Stepanenko; Grigory S Bublikov; Olga V Stepanenko; Daria M Shcherbakova; Vladislav V Verkhusha; Konstantin K Turoverov; Irina M Kuznetsova
Journal:  FEBS J       Date:  2014-04-01       Impact factor: 5.542

4.  Deep-tissue reporter-gene imaging with fluorescence and optoacoustic tomography: a performance overview.

Authors:  Nikolaos C Deliolanis; Angelique Ale; Stefan Morscher; Neal C Burton; Karin Schaefer; Karin Radrich; Daniel Razansky; Vasilis Ntziachristos
Journal:  Mol Imaging Biol       Date:  2014-10       Impact factor: 3.488

5.  A photoswitchable orange-to-far-red fluorescent protein, PSmOrange.

Authors:  Oksana M Subach; George H Patterson; Li-Min Ting; Yarong Wang; John S Condeelis; Vladislav V Verkhusha
Journal:  Nat Methods       Date:  2011-07-31       Impact factor: 28.547

6.  Multicontrast photoacoustic in vivo imaging using near-infrared fluorescent proteins.

Authors:  Arie Krumholz; Daria M Shcherbakova; Jun Xia; Lihong V Wang; Vladislav V Verkhusha
Journal:  Sci Rep       Date:  2014-02-03       Impact factor: 4.379

7.  Fluorescence molecular tomography: principles and potential for pharmaceutical research.

Authors:  Florian Stuker; Jorge Ripoll; Markus Rudin
Journal:  Pharmaceutics       Date:  2011-04-26       Impact factor: 6.321

8.  Mammalian expression of infrared fluorescent proteins engineered from a bacterial phytochrome.

Authors:  Xiaokun Shu; Antoine Royant; Michael Z Lin; Todd A Aguilera; Varda Lev-Ram; Paul A Steinbach; Roger Y Tsien
Journal:  Science       Date:  2009-05-08       Impact factor: 47.728

9.  Extended Stokes shift in fluorescent proteins: chromophore-protein interactions in a near-infrared TagRFP675 variant.

Authors:  Kiryl D Piatkevich; Vladimir N Malashkevich; Kateryna S Morozova; Nicolai A Nemkovich; Steven C Almo; Vladislav V Verkhusha
Journal:  Sci Rep       Date:  2013       Impact factor: 4.379

10.  Mitochondria-targeted heme oxygenase-1 induces oxidative stress and mitochondrial dysfunction in macrophages, kidney fibroblasts and in chronic alcohol hepatotoxicity.

Authors:  Seema Bansal; Gopa Biswas; Narayan G Avadhani
Journal:  Redox Biol       Date:  2013-07-23       Impact factor: 11.799

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  48 in total

1.  Molecular Basis of Spectral Diversity in Near-Infrared Phytochrome-Based Fluorescent Proteins.

Authors:  Daria M Shcherbakova; Mikhail Baloban; Sergei Pletnev; Vladimir N Malashkevich; Hui Xiao; Zbigniew Dauter; Vladislav V Verkhusha
Journal:  Chem Biol       Date:  2015-11-19

2.  Directed Evolution of a Bright Near-Infrared Fluorescent Rhodopsin Using a Synthetic Chromophore.

Authors:  Lukas Herwig; Austin J Rice; Claire N Bedbrook; Ruijie K Zhang; Antti Lignell; Jackson K B Cahn; Hans Renata; Sheel C Dodani; Inha Cho; Long Cai; Viviana Gradinaru; Frances H Arnold
Journal:  Cell Chem Biol       Date:  2017-03-02       Impact factor: 8.116

3.  Near-infrared optogenetic pair for protein regulation and spectral multiplexing.

Authors:  Taras A Redchuk; Evgeniya S Omelina; Konstantin G Chernov; Vladislav V Verkhusha
Journal:  Nat Chem Biol       Date:  2017-03-27       Impact factor: 15.040

Review 4.  Bacterial Vivisection: How Fluorescence-Based Imaging Techniques Shed a Light on the Inner Workings of Bacteria.

Authors:  Alexander Cambré; Abram Aertsen
Journal:  Microbiol Mol Biol Rev       Date:  2020-10-28       Impact factor: 11.056

5.  Near-Infrared Light-Controlled Gene Expression and Protein Targeting in Neurons and Non-neuronal Cells.

Authors:  Taras A Redchuk; Maksim M Karasev; Evgeniya S Omelina; Vladislav V Verkhusha
Journal:  Chembiochem       Date:  2018-04-14       Impact factor: 3.164

6.  Designing brighter near-infrared fluorescent proteins: insights from structural and biochemical studies.

Authors:  Mikhail Baloban; Daria M Shcherbakova; Sergei Pletnev; Vladimir Z Pletnev; J Clark Lagarias; Vladislav V Verkhusha
Journal:  Chem Sci       Date:  2017-05-04       Impact factor: 9.825

7.  How to Increase Brightness of Near-Infrared Fluorescent Proteins in Mammalian Cells.

Authors:  Anton A Shemetov; Olena S Oliinyk; Vladislav V Verkhusha
Journal:  Cell Chem Biol       Date:  2017-06-08       Impact factor: 8.116

8.  Longitudinal far red gene-reporter imaging of cancer metastasis in preclinical models: a tool for accelerating drug discovery.

Authors:  Banghe Zhu; Holly Robinson; Songlin Zhang; Grace Wu; Eva M Sevick-Muraca
Journal:  Biomed Opt Express       Date:  2015-08-13       Impact factor: 3.732

Review 9.  Near-Infrared Fluorescent Proteins: Multiplexing and Optogenetics across Scales.

Authors:  Daria M Shcherbakova; Olesya V Stepanenko; Konstantin K Turoverov; Vladislav V Verkhusha
Journal:  Trends Biotechnol       Date:  2018-07-23       Impact factor: 19.536

10.  Near-Infrared Fluorescent Proteins Engineered from Bacterial Phytochromes in Neuroimaging.

Authors:  Kiryl D Piatkevich; Ho-Jun Suk; Suhasa B Kodandaramaiah; Fumiaki Yoshida; Ellen M DeGennaro; Mikhail Drobizhev; Thomas E Hughes; Robert Desimone; Edward S Boyden; Vladislav V Verkhusha
Journal:  Biophys J       Date:  2017-10-07       Impact factor: 4.033

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