| Literature DB >> 26109581 |
Alexis Goichon1, Julien Bertrand1, Philippe Chan2, Stéphane Lecleire3, Aude Coquard4, Anne-Françoise Cailleux5, David Vaudry6, Pierre Déchelotte7, Moïse Coëffier8.
Abstract
BACKGROUND: Amino acids are well known to be key effectors of gut protein turnover. We recently reported that enteral delivery of proteins markedly stimulated global duodenal protein synthesis in carbohydrate-fed healthy humans, but specifically affected proteins remain unknown.Entities:
Keywords: cytoskeleton; duodenum; enteral nutrition; proteins; proteome
Mesh:
Substances:
Year: 2015 PMID: 26109581 PMCID: PMC7109707 DOI: 10.3945/ajcn.114.104216
Source DB: PubMed Journal: Am J Clin Nutr ISSN: 0002-9165 Impact factor: 7.045
FIGURE 1Silver-stained 2-dimensional gel images representing total proteins extracted from human duodenal mucosal biopsy samples after maltodextrin (A) and protein-supplemented maltodextrin (B) enteral perfusion. Differentially expressed proteins (i.e., at least ±1.5-fold modulated; circled spots with a number) were determined by statistical analysis (paired Student’s t test, P < 0.05) and correspond to the samples analyzed by liquid chromatography–tandem mass spectrometry. Protein identification results are depicted in Table 1. pI, isoelectric point; PP, protein powder.
Human duodenal mucosal proteome changes in response to protein infusion
| Theoretical | |||||||||
| Spot number | Swiss-Prot accession number | Protein name | pI | Mr, kDa | Fold change |
| Score on MASCOT | Sequence coverage, % | Peptide hit |
| 1, 2, 3, 4, 5 | P07814 | Glutamyl-prolyl-tRNA synthetase | 7.03 | 170.5 | 2.38, 1.75, 1.77, 1.75, 1.71 | 0.0108, 0.0395, 0.0296, 0.0478, 0.0391 | 78, 58, 32, 48, 38 | 2,1, 2, 2, 1 | 4, 2, 4, 2, 2 |
| 6 | Q92878 | DNA repair protein RAD50 | 6.48 | 153.8 | 1.84 | 0.0036 | 49 | 2 | 4 |
| 7, 8, 9 | — | Undetermined | — | — | 1.68, 2.04, 1.50 | 0.0273, 0.0155, 0.0058 | — | — | — |
| 10 | Q9H2F5 | Enhancer of polycomb homolog 1 | 8.77 | 93.4 | 1.50 | 0.0026 | 45 | 1 | 2 |
| 11 | P13639 | EF-2 | 6.41 | 95.3 | 1.65 | 0.0066 | 450 | 16 | 13 |
| 12 | P47897 | Glutaminyl-tRNA synthetase | 6.71 | 87.7 | 1.50 | 0.0415 | 163 | 9 | 7 |
| 13 | P07900 | HSP90α | 4.94 | 84.6 | 1.64 | 0.0019 | 487 | 16 | 12 |
| 14 | P15311 | Ezrin | 5.94 | 69.4 | 1.53 | 0.0044 | 254 | 11 | 8 |
| 15 | P26038 | Moesin | 6.08 | 67.8 | 2.26 | 0.0052 | 107 | 13 | 9 |
| 16 | P38646 | GRP-75 | 5.87 | 73.6 | 1.73 | 0.0060 | 627 | 30 | 19 |
| 17 | P38606 | V-type proton ATPase catalytic subunit A | 5.35 | 68.3 | 1.61 | 0.0105 | 480 | 22 | 14 |
| 18 | P20700 | Lamin B1 | 5.11 | 66.4 | 1.50 | 0.0410 | 1043 | 34 | 21 |
| 19 | Q14651 | Plastin 1 | 5.33 | 70.3 | 1.50 | 0.0004 | 263 | 3 | 3 |
| 20 | P53041 | PP5 | 5.88 | 56.8 | 1.82 | 0.0445 | 165 | 34 | 19 |
| 21 | P50991 | TCP-1δ | 7.96 | 57.9 | 1.91 | 0.0317 | 454 | 47 | 25 |
| 22 | Q6IB45 | eIF3f | 5.24 | 37.5 | 1.68 | 0.0009 | 197 | 9 | 3 |
| 23, 24 | P08670 | Vimentin | 5.06 | 53.6 | 1.73, 1.51 | 0.0008, 0.0003 | 117, 77 | 13, 10 | 6, 5 |
| 25 | — | Undetermined | — | — | 1.80 | 0.0464 | — | — | — |
| 26 | Q92597 | Protein NDRG1 | 5.49 | 42.8 | 1.50 | 0.0354 | 118 | 21 | 5 |
| 27 | Q969T7 | 7-Methylguanosine phosphate-specific 5′-nucleotidase | 6.21 | 33.6 | −5.55 | 0.0426 | 58 | 2 | 2 |
| 28 | P60709 | β-Actin | 5.29 | 41.7 | 4.04 | 0.0458 | 200 | 18 | 6 |
| 29 | P29692 | EF-1δ | 4.90 | 31.1 | 1.85 | 0.0041 | 65 | 12 | 2 |
| 30 | P62258 | 14-3-3 protein ɛ | 4.63 | 29.2 | −4.80 | 0.0028 | 286 | 28 | 7 |
| 31 | P09525 | Annexin A4 | 5.84 | 35.9 | −4.30 | 0.0018 | 221 | 22 | 7 |
| 32 | — | Undetermined | — | — | −2.65 | 0.0293 | — | — | — |
EF-1δ, elongation factor 1δ EF-2, elongation factor 2; eIF3f, eukaryotic translation initiation factor 3 subunit F; GRP-75, stress-70 protein (mitochondrial); HSP90α, heat shock protein 90α Mr, molar mass; NDRG1, N-myc downstream-regulated gene 1 protein; pI, isoelectric point; PP5, serine/threonine-protein phosphatase 5; TCP-1δ, T-complex protein 1δ tRNA, transfer RNA.
+, upregulated; −, downregulated.
Paired Student’s t test.
FIGURE 2Pie chart depicting the functional classification of proteins differentially expressed in human duodenal mucosa after 5 h of protein infusion. Using the online resource PANTHER classification system, proteins of interest were categorized into the broad GO classes of biological process and molecular function. For each category, the number of identified proteins and their percentage of the total number of proteins in the pie chart are indicated for each GO term. GO, gene ontology.
DAVID functional annotation clusters generated from the list of proteins differentially expressed in human duodenal mucosa after 5 h of protein infusion
| Annotation category | Term | Enrichment score | Protein count |
| Benjamini | Related genes |
| Annotation cluster 1 | ||||||
| PANTHER_MF_ALL | MF00077: chaperone | 2.09 | 4 | 0.0018 | 0.066 |
|
| SP_PIR_KEYWORDS | Chaperone | 3 | 0.013 | 0.14 |
| |
| Annotation cluster 2 | ||||||
| SP_PIR_KEYWORDS | Actin binding | 1.90 | 3 | 0.00086 | 0.011 |
|
| PANTHER_BP_ALL | BP00286: cell structure | 6 | 0.0023 | 0.096 |
| |
| PANTHER_MF_ALL | MF00091: cytoskeletal protein | 6 | 0.0052 | 0.097 |
| |
| PANTHER_MF_ALL | MF00261: actin binding cytoskeletal protein | 4 | 0.015 | 0.14 |
| |
| Annotation cluster 3 | ||||||
| SP_PIR_KEYWORDS | Protein biosynthesis | 1.87 | 5 | 0.000046 | 0.00086 |
|
| REACTOME_PATHWAY | REACT_17015: metabolism of proteins | 5 | 0.0037 | 0.033 |
| |
| PANTHER_MF_ALL | MF00071: translation factor | 3 | 0.0093 | 0.11 |
|
Fold enrichment of the cluster.
P value from the modified Fisher’s exact test (Expression Analysis Systematic Explorer score).
P value adjusted for multiple testing according to the Benjamini-Hochberg model.
Genes encoding the differentially expressed proteins in human: ACTB, actin, β CCT4, chaperonin containing TCP1, subunit 4 (δ); EEF1D, eukaryotic translation elongation factor 1δ EEF2, eukaryotic translation elongation factor 2; EIF3F, eukaryotic translation initiation factor 3, subunit F; EPRS, glutamyl-prolyl–transfer RNA synthetase; EZN, ezrin; HSPA9, heat shock 70-kDa protein 9; HSP90AA1, heat shock protein 90-kDa α; LMNB1, lamin B1; MSN, moesin; PLS1, plastin 1; QARS, glutaminyl–transfer RNA synthetase; VIM, vimentin; YWHAE, 14-3-3 protein ɛ.
FIGURE 3Effects of protein supplementation on EF-1δ, EF-2, eIF3f, ezrin, GRP-75, HSP90α, moesin, NDRG1, plastin 1, PP5, TCP-1δ, and β-actin expression in human duodenal mucosa. Representative immunoblots (A) and densitometric analysis of EF-1δ, EF-2, eIF3f, ezrin, GRP 75, HSP90α, moesin, NDRG1, plastin 1, PP5, TCP-1δ, and β-actin expression (B) in the duodenal mucosa of healthy volunteers after 5 h of enteral maltodextrins alone (control) or with protein supplementation. Values are means ± SEMs (n = 6). *Significantly different from the control group, P < 0.05 (paired Student’s t test). AU, arbitrary units; EF-1δ, elongation factor 1δ EF-2, elongation factor 2; eIF3f, eukaryotic translation initiation factor 3 subunit F; GRP-75, stress-70 protein (mitochondrial); HSP90α, heat shock protein 90α NDRG1, N-myc downstream-regulated gene 1 protein; PP, protein powder; PP5, serine/threonine-protein phosphatase 5; TCP-1δ, T-complex protein 1δ.
FIGURE 4Intervention levels of ezrin, moesin, plastin 1, and β-actin in the apical structure of human duodenal epithelial cells. Proteins in green are upregulated after protein supplementation. These modifications suggest an actin cytoskeleton remodeling in human duodenal mucosa. D, desmosome; TJ, tight junction; ZA, zonula adherens.