Literature DB >> 26109479

Molecular Simulation of the DPPE Lipid Bilayer Gel Phase: Coupling between Molecular Packing Order and Tail Tilt Angle.

Karthik Uppulury1, Patrick S Coppock1, James T Kindt1.   

Abstract

The structural properties and thermal stability of dipalmitoylphosphatidylethanolamine (DPPE) in the ordered gel phase have been studied by molecular dynamics simulation using two force fields: the Berger united-atom model and the CHARMM C36 atomistic model. As is widely known, structural features are sensitive to the initial preparation of the gel phase structure, as some degrees of freedom are slow to equilibrate on the simulation time scale of hundreds of nanoseconds. In particular, we find that the degree of alignment of the lipids' glycerol backbones, which join the two hydrocarbon tails of each molecule, strongly affects the tilt angle of the tails in the resulting structures. Disorder in the backbone correlates with lower tilt angles: bilayer configurations initiated with aligned backbones produced tilt angles near 21° and 29° for the Berger and C36 force fields, respectively, while structures initiated with randomized backbone orientations showed average tilt angles of 7° and 18°, in closer agreement with the untilted structure observed experimentally. The transition temperature for the Berger force field gel bilayer has been determined by monitoring changes in width of gel phase stripe domains as a function of temperature and is 12 ± 5 K lower than the experimental value.

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Year:  2015        PMID: 26109479     DOI: 10.1021/acs.jpcb.5b05720

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  7 in total

1.  Effect of Ceramide Tail Length on the Structure of Model Stratum Corneum Lipid Bilayers.

Authors:  Timothy C Moore; Remco Hartkamp; Christopher R Iacovella; Annette L Bunge; Clare McCabe
Journal:  Biophys J       Date:  2018-01-09       Impact factor: 4.033

2.  Investigating the Structure of Multicomponent Gel-Phase Lipid Bilayers.

Authors:  Remco Hartkamp; Timothy C Moore; Christopher R Iacovella; Michael A Thompson; Pallav A Bulsara; David J Moore; Clare McCabe
Journal:  Biophys J       Date:  2016-08-23       Impact factor: 4.033

3.  Multiscale Simulation of Ternary Stratum Corneum Lipid Mixtures: Effects of Cholesterol Composition.

Authors:  Parashara Shamaprasad; Timothy C Moore; Donna Xia; Christopher R Iacovella; Annette L Bunge; Clare McCabe
Journal:  Langmuir       Date:  2022-06-07       Impact factor: 4.331

4.  Composition Dependence of Water Permeation Across Multicomponent Gel-Phase Bilayers.

Authors:  Remco Hartkamp; Timothy C Moore; Christopher R Iacovella; Michael A Thompson; Pallav A Bulsara; David J Moore; Clare McCabe
Journal:  J Phys Chem B       Date:  2018-03-20       Impact factor: 2.991

5.  Lipid Head Group Parameterization for GROMOS 54A8: A Consistent Approach with Protein Force Field Description.

Authors:  Irene Marzuoli; Christian Margreitter; Franca Fraternali
Journal:  J Chem Theory Comput       Date:  2019-09-09       Impact factor: 6.006

6.  Examining Tail and Headgroup Effects on Binary and Ternary Gel-Phase Lipid Bilayer Structure.

Authors:  Alexander Yang; Timothy C Moore; Christopher R Iacovella; Michael Thompson; David J Moore; Clare McCabe
Journal:  J Phys Chem B       Date:  2020-04-07       Impact factor: 3.466

7.  The Effects of Alkyl Chain Combinations on the Structural and Mechanical Properties of Biomimetic Ion Pair Amphiphile Bilayers.

Authors:  Cheng-Hao Chen; Ching-An Tian; Chi-Cheng Chiu
Journal:  Bioengineering (Basel)       Date:  2017-10-11
  7 in total

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