Literature DB >> 26107900

[The complete mitochondrial genome of peacock sole Pardachirus pavoninus (Pleuronectiformes: Soleidae) and comparative analysis of the control region among 13 soles].

L Gong1,2, W Shi1, L-Z Si1,2, Z-M Wang3, X-Y Kong1,4.   

Abstract

The complete mitogenome of the peacock sole Pardachirus pavoninus (Lacepède, 1802) was determined. The total length is 16 536 bp, containing 13 protein-coding genes, 22 tRNA genes and two rRNA genes, as well as one control region (CR). The L-strand replication origin (OL), which is typically located in the WANCY cluster, is lost in P. pavoninus. The gene arrangement is identical to that in most teleosts. Comparison of the CR sequences among 13 soles reveals that a 211-bp fragment at the 5'-end of the CR is lost in the P. pavoninus mitogenome, responsible for its short sequence with a length of 872 bp. All typical conservative blocks (TAS, CSB-F, E, D, C, B, A, CSB-1, 2, 3) are identified. Seven out of 13 soles contain tandem repeats in the CR and the possible mechanisms of their formation are discussed. These results may provide the consensus sequences of the conserved units in the sole CR as well as molecular data for phylogenetic studies on Soleidae and Pleuronectiformes.

Entities:  

Keywords:  OL; flatfish; heteroplasmy; tandem repeat; termination associated sequence

Mesh:

Year:  2015        PMID: 26107900     DOI: 10.7868/S0026898415030064

Source DB:  PubMed          Journal:  Mol Biol (Mosk)        ISSN: 0026-8984


  2 in total

1.  Complete mitogenomes of four Trichiurus species: A taxonomic review of the T.lepturus species complex.

Authors:  Mu-Rong Yi; Kui-Ching Hsu; Sui Gu; Xiong-Bo He; Zhi-Sen Luo; Hung-Du Lin; Yun-Rong Yan
Journal:  Zookeys       Date:  2022-01-26       Impact factor: 1.546

2.  Comparative Mitogenomics of the Genus Odontobutis (Perciformes: Gobioidei: Odontobutidae) Revealed Conserved Gene Rearrangement and High Sequence Variations.

Authors:  Zhihong Ma; Xuefen Yang; Miklos Bercsenyi; Junjie Wu; Yongyao Yu; Kaijian Wei; Qixue Fan; Ruibin Yang
Journal:  Int J Mol Sci       Date:  2015-10-20       Impact factor: 5.923

  2 in total

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