Literature DB >> 26105054

The Activation Pathway of Human Rhodopsin in Comparison to Bovine Rhodopsin.

Roman Kazmin1, Alexander Rose2, Michal Szczepek3, Matthias Elgeti4, Eglof Ritter5, Ronny Piechnick4, Klaus Peter Hofmann6, Patrick Scheerer7, Peter W Hildebrand2, Franz J Bartl8.   

Abstract

Rhodopsin, the photoreceptor of rod cells, absorbs light to mediate the first step of vision by activating the G protein transducin (Gt). Several human diseases, such as retinitis pigmentosa or congenital night blindness, are linked to rhodopsin malfunctions. Most of the corresponding in vivo studies and structure-function analyses (e.g. based on protein x-ray crystallography or spectroscopy) have been carried out on murine or bovine rhodopsin. Because these rhodopsins differ at several amino acid positions from human rhodopsin, we conducted a comprehensive spectroscopic characterization of human rhodopsin in combination with molecular dynamics simulations. We show by FTIR and UV-visible difference spectroscopy that the light-induced transformations of the early photointermediates are very similar. Significant differences between the pigments appear with formation of the still inactive Meta I state and the transition to active Meta II. However, the conformation of Meta II and its activity toward the G protein are essentially the same, presumably reflecting the evolutionary pressure under which the active state has developed. Altogether, our results show that although the basic activation pathways of human and bovine rhodopsin are similar, structural deviations exist in the inactive conformation and during receptor activation, even between closely related rhodopsins. These differences between the well studied bovine or murine rhodopsins and human rhodopsin have to be taken into account when the influence of point mutations on the activation pathway of human rhodopsin are investigated using the bovine or murine rhodopsin template sequences.
© 2015 by The American Society for Biochemistry and Molecular Biology, Inc.

Entities:  

Keywords:  G protein-coupled receptor (GPCR); human; protein dynamic; receptor; rhodopsin; structure-function

Mesh:

Substances:

Year:  2015        PMID: 26105054      PMCID: PMC4536423          DOI: 10.1074/jbc.M115.652172

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  53 in total

1.  Time-resolved rhodopsin activation currents in a unicellular expression system.

Authors:  J M Sullivan; P Shukla
Journal:  Biophys J       Date:  1999-09       Impact factor: 4.033

2.  FTIR spectroscopy of complexes formed between metarhodopsin II and C-terminal peptides from the G-protein alpha- and gamma-subunits.

Authors:  F Bartl; E Ritter; K P Hofmann
Journal:  FEBS Lett       Date:  2000-05-12       Impact factor: 4.124

3.  Role of the conserved NPxxY(x)5,6F motif in the rhodopsin ground state and during activation.

Authors:  Olaf Fritze; Sławomir Filipek; Vladimir Kuksa; Krzysztof Palczewski; Klaus Peter Hofmann; Oliver P Ernst
Journal:  Proc Natl Acad Sci U S A       Date:  2003-02-24       Impact factor: 11.205

4.  Photolysis of rhodopsin results in deprotonation of its retinal Schiff's base prior to formation of metarhodopsin II.

Authors:  T E Thorgeirsson; J W Lewis; S E Wallace-Williams; D S Kliger
Journal:  Photochem Photobiol       Date:  1992-12       Impact factor: 3.421

5.  Steric and electronic influences on the torsional energy landscape of retinal.

Authors:  Blake Mertz; Michael Lu; Michael F Brown; Scott E Feller
Journal:  Biophys J       Date:  2011-08-03       Impact factor: 4.033

Review 6.  Lifting the lid on GPCRs: the role of extracellular loops.

Authors:  M Wheatley; D Wootten; M T Conner; J Simms; R Kendrick; R T Logan; D R Poyner; J Barwell
Journal:  Br J Pharmacol       Date:  2012-03       Impact factor: 8.739

7.  Monoclonal antibodies to rhodopsin: characterization, cross-reactivity, and application as structural probes.

Authors:  R S Molday; D MacKenzie
Journal:  Biochemistry       Date:  1983-02-01       Impact factor: 3.162

8.  Sequential rearrangement of interhelical networks upon rhodopsin activation in membranes: the Meta II(a) conformational substate.

Authors:  Ekaterina Zaitseva; Michael F Brown; Reiner Vogel
Journal:  J Am Chem Soc       Date:  2010-04-07       Impact factor: 15.419

9.  Structural and functional role of helices I and II in rhodopsin. A novel interplay evidenced by mutations at Gly-51 and Gly-89 in the transmembrane domain.

Authors:  Laia Bosch; Eva Ramon; Luis J Del Valle; Pere Garriga
Journal:  J Biol Chem       Date:  2003-03-26       Impact factor: 5.157

10.  Improved side-chain torsion potentials for the Amber ff99SB protein force field.

Authors:  Kresten Lindorff-Larsen; Stefano Piana; Kim Palmo; Paul Maragakis; John L Klepeis; Ron O Dror; David E Shaw
Journal:  Proteins       Date:  2010-06
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  5 in total

Review 1.  Quantum Mechanical and Molecular Mechanics Modeling of Membrane-Embedded Rhodopsins.

Authors:  Mikhail N Ryazantsev; Dmitrii M Nikolaev; Andrey V Struts; Michael F Brown
Journal:  J Membr Biol       Date:  2019-09-30       Impact factor: 1.843

Review 2.  Rhodopsins: An Excitingly Versatile Protein Species for Research, Development and Creative Engineering.

Authors:  Willem J de Grip; Srividya Ganapathy
Journal:  Front Chem       Date:  2022-06-22       Impact factor: 5.545

3.  Protein Sequence and Membrane Lipid Roles in the Activation Kinetics of Bovine and Human Rhodopsins.

Authors:  Istvan Szundi; Chie Funatogawa; Ying Guo; Elsa C Y Yan; David S Kliger
Journal:  Biophys J       Date:  2017-11-07       Impact factor: 4.033

4.  Inhibition or Stimulation of Autophagy Affects Early Formation of Lipofuscin-Like Autofluorescence in the Retinal Pigment Epithelium Cell.

Authors:  Lei Lei; Radouil Tzekov; Huapeng Li; J Hugh McDowell; Guangping Gao; W Clay Smith; Shibo Tang; Shalesh Kaushal
Journal:  Int J Mol Sci       Date:  2017-03-29       Impact factor: 5.923

5.  A Case Study of Eukaryogenesis: The Evolution of Photoreception by Photolyase/Cryptochrome Proteins.

Authors:  Jennifer A Miles; Thomas A Davies; Robert D Hayman; Georgia Lorenzen; Jamie Taylor; Mubeena Anjarwalla; Sammie J R Allen; John W D Graham; Paul C Taylor
Journal:  J Mol Evol       Date:  2020-09-26       Impact factor: 2.395

  5 in total

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