Literature DB >> 26101093

Publisher’s Note:Abstraction for data integration:Fusing mammalian molecular, cellular and phenotype big datasets for better knowledge extraction.

Andrew D Rouillard, Zichen Wang, Avi Ma'ayan.   

Abstract

Entities:  

Year:  2015        PMID： 26101093      PMCID： PMC4675694          DOI： 10.1016/j.compbiolchem.2015.06.003

Source DB:  PubMed          Journal:  Comput Biol Chem        ISSN： 1476-9271            Impact factor:   2.877


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  118 in total

1.  An algorithmic framework for predicting side effects of drugs.

Authors:  Nir Atias; Roded Sharan
Journal:  J Comput Biol       Date:  2011-03       Impact factor: 1.479

2.  Combining drug and gene similarity measures for drug-target elucidation.

Authors:  Liat Perlman; Assaf Gottlieb; Nir Atias; Eytan Ruppin; Roded Sharan
Journal:  J Comput Biol       Date:  2011-02       Impact factor: 1.479

3.  Data-driven prediction of drug effects and interactions.

Authors:  Nicholas P Tatonetti; Patrick P Ye; Roxana Daneshjou; Russ B Altman
Journal:  Sci Transl Med       Date:  2012-03-14       Impact factor: 17.956

4.  Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles.

Authors:  Aravind Subramanian; Pablo Tamayo; Vamsi K Mootha; Sayan Mukherjee; Benjamin L Ebert; Michael A Gillette; Amanda Paulovich; Scott L Pomeroy; Todd R Golub; Eric S Lander; Jill P Mesirov
Journal:  Proc Natl Acad Sci U S A       Date:  2005-09-30       Impact factor: 11.205

5.  ChIP-Enrich: gene set enrichment testing for ChIP-seq data.

Authors:  Ryan P Welch; Chee Lee; Paul M Imbriano; Snehal Patil; Terry E Weymouth; R Alex Smith; Laura J Scott; Maureen A Sartor
Journal:  Nucleic Acids Res       Date:  2014-05-30       Impact factor: 16.971

Review 6.  Data mining of the public version of the FDA Adverse Event Reporting System.

Authors:  Toshiyuki Sakaeda; Akiko Tamon; Kaori Kadoyama; Yasushi Okuno
Journal:  Int J Med Sci       Date:  2013-04-25       Impact factor: 3.738

7.  LINCS Canvas Browser: interactive web app to query, browse and interrogate LINCS L1000 gene expression signatures.

Authors:  Qiaonan Duan; Corey Flynn; Mario Niepel; Marc Hafner; Jeremy L Muhlich; Nicolas F Fernandez; Andrew D Rouillard; Christopher M Tan; Edward Y Chen; Todd R Golub; Peter K Sorger; Aravind Subramanian; Avi Ma'ayan
Journal:  Nucleic Acids Res       Date:  2014-06-06       Impact factor: 16.971

8.  Systematic identification of proteins that elicit drug side effects.

Authors:  Michael Kuhn; Mumna Al Banchaabouchi; Monica Campillos; Lars Juhl Jensen; Cornelius Gross; Anne-Claude Gavin; Peer Bork
Journal:  Mol Syst Biol       Date:  2013       Impact factor: 11.429

9.  miRNA target enrichment analysis reveals directly active miRNAs in health and disease.

Authors:  Israel Steinfeld; Roy Navon; Robert Ach; Zohar Yakhini
Journal:  Nucleic Acids Res       Date:  2012-12-02       Impact factor: 16.971

10.  Integrative annotation of chromatin elements from ENCODE data.

Authors:  Michael M Hoffman; Jason Ernst; Steven P Wilder; Anshul Kundaje; Robert S Harris; Max Libbrecht; Belinda Giardine; Paul M Ellenbogen; Jeffrey A Bilmes; Ewan Birney; Ross C Hardison; Ian Dunham; Manolis Kellis; William Stafford Noble
Journal:  Nucleic Acids Res       Date:  2012-12-05       Impact factor: 16.971
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  1 in total

Review 1.  Machine Learning and Integrative Analysis of Biomedical Big Data.

Authors:  Bilal Mirza; Wei Wang; Jie Wang; Howard Choi; Neo Christopher Chung; Peipei Ping
Journal:  Genes (Basel)       Date:  2019-01-28       Impact factor: 4.096
  1 in total

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