| Literature DB >> 26100556 |
Dorota Koziel1, Stanislaw Gluszek2,3, Artur Kowalik4, Malgorzata Chlopek5, Liliana Pieciak6.
Abstract
BACKGROUND: Explanation of the ultimate causes of acute and chronic pancreatitis is challenging. Hence, it is necessary to seek various etiological factors, including genetic mutations that may be of importance in triggering recurrence and progression of acute to chronic pancreatitis. The aim of this study was to determine the frequency of genetic mutations in patients with acute pancreatitis and to investigate their relationship with the etiology and clinical course.Entities:
Mesh:
Substances:
Year: 2015 PMID: 26100556 PMCID: PMC4476205 DOI: 10.1186/s12876-015-0302-6
Source DB: PubMed Journal: BMC Gastroenterol ISSN: 1471-230X Impact factor: 3.067
Sequences of primers used for the reaction and methods used
| Gene | Method | Primer sequence | |
|---|---|---|---|
| CFTR ex10 | allele-specific PCR | F R M | GCAAGTGAATCCTGAGCGTG |
| TGGGTAGTGTGAAGGGTTCAT | |||
| GCACCATTAAAGAAAATATCATTGG | |||
| SPINK1 ex3 | HRM/capillary sequencing | F R | TTGCTATGAACTCAAGAATGGAGA |
| CCGATTTTCAAAACATAACACTG | |||
| CTRC ex7 | HRM/capillary sequencing | F R | CTTATGCCCTCCCGGTCTGG |
| GGACAGCTGTGGAGGCAG | |||
| CTRC ex3 | HRM/capillary sequencing | F R | CTGACACACAGCCCTCCC |
| ATGGCCAGGTCTCAGGGTAT |
Contingency Table for analysis of the association between gender and mutation in SPINK1, CFTR, CTRC in the group of patients with AP and the control group of healthy individuals without a past history of acute pancreatitis
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|
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| |||||||
|---|---|---|---|---|---|---|---|---|---|
| Yes | No | Yes | No | Yes | No | ||||
| Patients with AP | |||||||||
| Female | 5 | 83 | NS* | 4 | 84 | NS | 1 | 87 | NS |
| Male | 9 | 124 | 1 | 132 | 3 | 130 | |||
|
| 14 | 207 | - | 5 | 216 | - | 4 | 217 | - |
| Control group of healthy individuals | |||||||||
| Female | 8 | 215 | NS | 6 | 217 | NS | 2 | 221 | NS |
| Male | 3 | 119 | 7 | 115 | 2 | 120 | |||
| Marginal Column Totals | 11 | 334 | - | 13 | 332 | 4 | 341 | - | |
NS* no statistical significance
Clinical course of AP according to causes of the disease in the group of patients with mutation diagnosed
| Alcohol | Gallstones | Cancer | Idiopathic | Control population | |
|---|---|---|---|---|---|
| 11 (3.2 %) | |||||
| Mild AP | 2 (2.9 %) | 2 (2.5 %) | 0 | 2 (3.2 %) | |
| Moderate and severe AP | 3 (4.3 %) | 3 (3.7 %) | 0 | 2 (3.2 %) | |
| 13 (3.8 %) | |||||
| Mild AP | 1 (1.4 %) | 2 (2.5 %) | 1 (14.3 %) | 0 | |
| Moderate and severe AP | 1 (1.2 %) | 0 | 0 | ||
| 4 (1.2 %) | |||||
| Mild AP | 1 (1.4 %) | 1 (1.2 %) | 0 | 0 | |
| Moderate and severe AP | 1 (1.4 %) | 1 (1.2 %) | 0 | 0 |
Mutations detected in the SPINK 1, CFTR, CTRC genes in correlation with clinical data
| Gene mutation | No. of patients | BMI | Alcohol abuse (≥40 g daily) | Cigarette smoking (currently) | Pancreatic diseases in family | Concomitant diseases | Recurrences |
|---|---|---|---|---|---|---|---|
| 12 (5.42 %) | |||||||
| 1 | 26.0 | Yes | No | No | None | Yes | |
| 2 | 20.2 | Yes | No | No | None | No | |
| 3 | 29.8 | No | No | None | No | ||
| 4 | 24.0 | No | No | No | cardiovascular diseases, atherosclerosis, Parkinson’s disease | No | |
| 5 | 29.4 | No | No | No | None | No | |
| 6 | 23.4 | Yes | Yes | No | None | Yes | |
| 7 | 22.4 | Yes | Yes | No | gallstones, gastroesophageal reflux disease, psychoorganic syndrome | No | |
| 8 | 27.7 | No | No | No | None | No | |
| 9 | 26.4 | No | Yes | Yes | arterial hypertension | Yes | |
| 10 | 25.4 | No | No | No | None | Yes | |
| 11 | 30.1 | Yes | Yes | No | arterial hypertension, type-2 diabetes | No | |
| 12 | 26.6 | Yes | No | No | None | No | |
| 2 (0.9 %) | |||||||
| 1 | 27.0 | Yes | No | No | None | ||
| 2 | 19.0 | No | No | No | cardiovascular diseases, gallstones | No | |
| 5 (2.3 %) | |||||||
| 1 | 20.2 | No | No | Yes | cardiovascular diseases | No | |
| 2 | 26.4 | No | No | No | arterial hypertension | Yes | |
| 3 | 25.6 | No | No | No | arterial hypertension | No | |
| 4 | 19.2 | No | No | No | pancreatic cancer | No | |
| 5 | 26.0 | Yes | Yes | No | None | No | |
| 2 (0.9 %) | |||||||
| 1 | 23.4 | Yes | Yes | No | None | No | |
| 2 | 22.9 | Yes | Yes | No | None | Yes | |
| p.I259V c.775A > C exon 7 | 1 (0.5 %) | ||||||
| 1 | 27.0 | No | No | Yes | Yes | ||
| p.K247_R254 delc.738_761del24 exon 7 | 1 (0.5 %) | ||||||
| 1 | 26.2 | No | No | No | None | No |
Frequency and odds ratios (95 % CI) of mutations in SPINK1, CFTR, CTRC in the individual groups with acute pancreatitis and in the control group
| No. |
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|
|
|
|
| ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Severity of the course | ||||||||||||
| Mild AP | 144 | 6 (4.2 %) | 2.05 (0.85-5.1) | 4 (2.8 %) | 0.59 (0.16- 1.80) | NS | 2 (1.4 %) | 1.57 (0.29-8.52) | NS | |||
| Moderate AP | 39 | 7 (17.9 %) | 8 (10.4 %) | 0 | 2 (1.4 %) | 1,4 % | ||||||
| Severe AP | 38 | 1 (2.6 %) | 1 (2.6 %) | 1 (2.6 %) | ||||||||
| Etiology of AP | ||||||||||||
| Alcohol | 70 | 5 (7.1 %) | 2.33 (0.61- 7.57) | NS | 1 (1.4 %) | 0.37 (0.01-2.55) | NS | 2 (2.9 %) | 2.50 (0.22- 17.84) | NS | ||
| Gallstones | 81 | 5 (6.2 %) | 1.99 (0.53- 6.45) | 3 (3.7 %) | 0.98 (0.18- 3.7) | 2 (2.5 %) | 2.15 (0.19-15.33) | |||||
| Idiopathic | 63 | 4 (6.3) | 2.05 (0.46- 7.23) | 0 | 0 (0–1.78) | 0 | 0 (0–8.365) | |||||
| Cancer | 7 | 0 | 0 (0–23.88) | 1 (14.3 %) | 4.2 (20.09- 39.08) | 0 | 0 (0–85.65) | |||||
| Reccurrences of AP | ||||||||||||
| Yes | 82 | 5 (6.1 %) | 1.97 (0.52- 6.37) | NS | 1 (1.2 %) | 0.32 (0.01- 2.16) | NS | 2 (2.4 %) | 2.13 (0.19- 15.135) | NS | ||
| No | 139 | 9 (6.5 %) | 2.10 (0.75- 5.72) | 4 (2.9 %) | 0.76 (0.18- 2.51) | 2 (1.4 %) | 1.24 (0.111-8.8 | |||||
| Control group | 345 | 11 (3.2 %)* | 13 (3.8 %)** | 4 (1.2 %)** | ||||||||
Indicates that the odds of SPINK1 mutations are 2.05 times higher in the AP group than in the control group. The limits (0.847; 5.096) for OR 95 % confidence interval are not very wide, so the OR estimate has rather good precision. The association between the group and the SPINK1mutations occurrence is not significant at the 0.05 level because 95 % confidence interval for the OR contains 1. However, right-sided F exact test rejects the null hypothesis that OR = 1 in favour of the alternative hypothesis that true odds ratio is higher than 1 (p = 0.0466). This means that the odds of SPINK1 in the AP group are higher than in the control group, and this conclusion is statistically significant at the 0.05 level
NS no statistical significance
*SPINK1 mutation in the acute pancreatitis group (AP) is more frequent than in the control group: p < 0.005
**The differences between the CFTR, CTRC mutations in the acute pancreatitis group (AP) and in the control group are insignificant