Literature DB >> 26097186

Quantitative proteomics using SILAC: Principles, applications, and developments.

Xiulan Chen1, Shasha Wei1, Yanlong Ji1,2, Xiaojing Guo1, Fuquan Yang1.   

Abstract

SILAC is based on direct addition of selected stable isotope amino acids into the cell culture medium, allowing superior quantitative analysis of the cellular proteome compared to other labeling methods. The great advantages of SILAC lie in its straight-forward implementation, quantitative accuracy, and reproducibility over chemical labeling or label-free quantification strategies, favoring its adoption for proteomic research. SILAC has been widely applied to characterize the proteomic changes between different biological samples, to investigate dynamic changes of protein PTMs, to distinguish specific interacting proteins in interaction proteomic analysis, and to analyze protein turnover in the proteome-wide scale. The present review summarizes the principles of SILAC technology, its applications in biological research, and the present state of this technology.
© 2015 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Keywords:  MS; Quantitative proteomics; SILAC; Super-SILAC; Technology

Mesh:

Year:  2015        PMID: 26097186     DOI: 10.1002/pmic.201500108

Source DB:  PubMed          Journal:  Proteomics        ISSN: 1615-9853            Impact factor:   3.984


  47 in total

1.  Loss of TIM50 suppresses proliferation and induces apoptosis in breast cancer.

Authors:  Shui-Ping Gao; He-Fen Sun; Hong-Lin Jiang; Liang-Dong Li; Xin Hu; Xiao-En Xu; Wei Jin
Journal:  Tumour Biol       Date:  2015-08-20

2.  Uncovering BRD4 hyperphosphorylation associated with cellular transformation in NUT midline carcinoma.

Authors:  Ranran Wang; Xing-Jun Cao; Katarzyna Kulej; Wei Liu; Tongcui Ma; Margo MacDonald; Cheng-Ming Chiang; Benjamin A Garcia; Jianxin You
Journal:  Proc Natl Acad Sci U S A       Date:  2017-06-19       Impact factor: 11.205

3.  HIV-1 Vpu Downmodulates ICAM-1 Expression, Resulting in Decreased Killing of Infected CD4+ T Cells by NK Cells.

Authors:  Scott M Sugden; Tram N Q Pham; Éric A Cohen
Journal:  J Virol       Date:  2017-03-29       Impact factor: 5.103

4.  Integrative Metabolic Pathway Analysis Reveals Novel Therapeutic Targets in Osteoarthritis.

Authors:  Beatriz Rocha; Berta Cillero-Pastor; Gert Eijkel; Valentina Calamia; Patricia Fernandez-Puente; Martin R L Paine; Cristina Ruiz-Romero; Ron M A Heeren; Francisco J Blanco
Journal:  Mol Cell Proteomics       Date:  2020-01-24       Impact factor: 5.911

5.  SILAC-based quantitative proteomic analysis of Drosophila gastrula stage embryos mutant for fibroblast growth factor signalling.

Authors:  Hamze Beati; Alistair Langlands; Sara Ten Have; H-Arno J Müller
Journal:  Fly (Austin)       Date:  2019-12-24       Impact factor: 2.160

6.  Small molecule target identification using photo-affinity chromatography.

Authors:  Seung-Yong Seo; Timothy W Corson
Journal:  Methods Enzymol       Date:  2019-03-15       Impact factor: 1.600

7.  Electron-deficient p-benzoyl-l-phenylalanine derivatives increase covalent chemical capture yields for protein-protein interactions.

Authors:  Cassandra M Joiner; Meghan E Breen; Anna K Mapp
Journal:  Protein Sci       Date:  2019-04-29       Impact factor: 6.725

8.  The therapeutic response of CDDO-Me in the esophageal squamous cell carcinoma (ESCC) cells is mediated by CaMKIIα.

Authors:  Yan-Yang Wang; Shun Zhou; Ren Zhao; Ping Hai; Hong Zhe
Journal:  Am J Transl Res       Date:  2016-04-15       Impact factor: 4.060

9.  FRACPRED-2D-PRM: A Fraction Prediction Algorithm-Assisted 2D Liquid Chromatography-Based Parallel Reaction Monitoring-Mass Spectrometry Approach for Measuring Low-Abundance Proteins in Human Plasma.

Authors:  Jian Shi; Jingcheng Xiao; Jiapeng Li; Xinwen Wang; Lucy Her; Matthew J Sorensen; Hao-Jie Zhu
Journal:  Proteomics       Date:  2020-11-03       Impact factor: 3.984

10.  Ascorbate peroxidase proximity labeling coupled with biochemical fractionation identifies promoters of endoplasmic reticulum-mitochondrial contacts.

Authors:  Il-Taeg Cho; Guillaume Adelmant; Youngshin Lim; Jarrod A Marto; Ginam Cho; Jeffrey A Golden
Journal:  J Biol Chem       Date:  2017-07-31       Impact factor: 5.157

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