Literature DB >> 26093826

A renaissance in RNA synthetic biology: new mechanisms, applications and tools for the future.

James Chappell1, Kyle E Watters1, Melissa K Takahashi1, Julius B Lucks2.   

Abstract

Since our ability to engineer biological systems is directly related to our ability to control gene expression, a central focus of synthetic biology has been to develop programmable genetic regulatory systems. Researchers are increasingly turning to RNA regulators for this task because of their versatility, and the emergence of new powerful RNA design principles. Here we review advances that are transforming the way we use RNAs to engineer biological systems. First, we examine new designable RNA mechanisms that are enabling large libraries of regulators with protein-like dynamic ranges. Next, we review emerging applications, from RNA genetic circuits to molecular diagnostics. Finally, we describe new experimental and computational tools that promise to accelerate our understanding of RNA folding, function and design.
Copyright © 2015 The Authors. Published by Elsevier Ltd.. All rights reserved.

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Year:  2015        PMID: 26093826     DOI: 10.1016/j.cbpa.2015.05.018

Source DB:  PubMed          Journal:  Curr Opin Chem Biol        ISSN: 1367-5931            Impact factor:   8.822


  36 in total

1.  Synthetic negative feedback circuits using engineered small RNAs.

Authors:  Ciarán L Kelly; Andreas W K Harris; Harrison Steel; Edward J Hancock; John T Heap; Antonis Papachristodoulou
Journal:  Nucleic Acids Res       Date:  2018-10-12       Impact factor: 16.971

2.  Precise quantification of translation inhibition by mRNA structures that overlap with the ribosomal footprint in N-terminal coding sequences.

Authors:  Amin Espah Borujeni; Daniel Cetnar; Iman Farasat; Ashlee Smith; Natasha Lundgren; Howard M Salis
Journal:  Nucleic Acids Res       Date:  2017-05-19       Impact factor: 16.971

Review 3.  Synthetic Biology: Engineering Living Systems from Biophysical Principles.

Authors:  Bryan A Bartley; Kyung Kim; J Kyle Medley; Herbert M Sauro
Journal:  Biophys J       Date:  2017-03-28       Impact factor: 4.033

4.  Design of highly active double-pseudoknotted ribozymes: a combined computational and experimental study.

Authors:  Ryota Yamagami; Mohammad Kayedkhordeh; David H Mathews; Philip C Bevilacqua
Journal:  Nucleic Acids Res       Date:  2019-01-10       Impact factor: 16.971

5.  Synthetic Tet-inducible small hairpin RNAs targeting hTERT or Bcl-2 inhibit malignant phenotypes of bladder cancer T24 and 5637 cells.

Authors:  Junhao Lin; Yuchen Liu; Yonghao Zhan; Chengle Zhuang; Li Liu; Xing Fu; Wen Xu; Jianfa Li; Mingwei Chen; Zhiming Cai; Weiren Huang
Journal:  Tumour Biol       Date:  2015-10-01

6.  AptaBlocks: Designing RNA complexes and accelerating RNA-based drug delivery systems.

Authors:  Yijie Wang; Jan Hoinka; Yong Liang; Tomasz Adamus; Piotr Swiderski; Teresa M Przytycka
Journal:  Nucleic Acids Res       Date:  2018-09-19       Impact factor: 16.971

Review 7.  Engineering cell-based therapies to interface robustly with host physiology.

Authors:  Kelly A Schwarz; Joshua N Leonard
Journal:  Adv Drug Deliv Rev       Date:  2016-06-03       Impact factor: 15.470

8.  Designing fluorescent biosensors using circular permutations of riboswitches.

Authors:  Johnny Truong; Yu-Fang Hsieh; Lynda Truong; Guifang Jia; Ming C Hammond
Journal:  Methods       Date:  2018-02-16       Impact factor: 3.608

9.  RNA Polymerase Tags To Monitor Multidimensional Protein-Protein Interactions Reveal Pharmacological Engagement of Bcl-2 Proteins.

Authors:  Jinyue Pu; Jeffrey A Dewey; Abbas Hadji; James L LaBelle; Bryan C Dickinson
Journal:  J Am Chem Soc       Date:  2017-08-15       Impact factor: 15.419

Review 10.  Exploitation of Bacillus subtilis as a robust workhorse for production of heterologous proteins and beyond.

Authors:  Wenjing Cui; Laichuang Han; Feiya Suo; Zhongmei Liu; Li Zhou; Zhemin Zhou
Journal:  World J Microbiol Biotechnol       Date:  2018-09-10       Impact factor: 3.312

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