Literature DB >> 26093156

Imaging-based enrichment criteria using deep learning algorithms for efficient clinical trials in mild cognitive impairment.

Vamsi K Ithapu1, Vikas Singh2, Ozioma C Okonkwo3, Richard J Chappell4, N Maritza Dowling5, Sterling C Johnson6.   

Abstract

The mild cognitive impairment (MCI) stage of Alzheimer's disease (AD) may be optimal for clinical trials to test potential treatments for preventing or delaying decline to dementia. However, MCI is heterogeneous in that not all cases progress to dementia within the time frame of a trial and some may not have underlying AD pathology. Identifying those MCIs who are most likely to decline during a trial and thus most likely to benefit from treatment will improve trial efficiency and power to detect treatment effects. To this end, using multimodal, imaging-derived, inclusion criteria may be especially beneficial. Here, we present a novel multimodal imaging marker that predicts future cognitive and neural decline from [F-18]fluorodeoxyglucose positron emission tomography (PET), amyloid florbetapir PET, and structural magnetic resonance imaging, based on a new deep learning algorithm (randomized denoising autoencoder marker, rDAm). Using ADNI2 MCI data, we show that using rDAm as a trial enrichment criterion reduces the required sample estimates by at least five times compared with the no-enrichment regime and leads to smaller trials with high statistical power, compared with existing methods.
Copyright © 2015 The Alzheimer's Association. Published by Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Alzheimer's disease; Clinical trials; Deep learning; Sample enrichment

Mesh:

Substances:

Year:  2015        PMID: 26093156      PMCID: PMC4684492          DOI: 10.1016/j.jalz.2015.01.010

Source DB:  PubMed          Journal:  Alzheimers Dement        ISSN: 1552-5260            Impact factor:   21.566


  23 in total

1.  The diagnosis of mild cognitive impairment due to Alzheimer's disease: recommendations from the National Institute on Aging-Alzheimer's Association workgroups on diagnostic guidelines for Alzheimer's disease.

Authors:  Marilyn S Albert; Steven T DeKosky; Dennis Dickson; Bruno Dubois; Howard H Feldman; Nick C Fox; Anthony Gamst; David M Holtzman; William J Jagust; Ronald C Petersen; Peter J Snyder; Maria C Carrillo; Bill Thies; Creighton H Phelps
Journal:  Alzheimers Dement       Date:  2011-04-21       Impact factor: 21.566

2.  Simulating effects of biomarker enrichment on Alzheimer's disease prevention trials: conceptual framework and example.

Authors:  Jeannie-Marie S Leoutsakos; Alexandra L Bartlett; Sarah N Forrester; Constantine G Lyketsos
Journal:  Alzheimers Dement       Date:  2013-08-15       Impact factor: 21.566

3.  Choosing Alzheimer's disease prevention clinical trial populations.

Authors:  Joshua D Grill; Sarah E Monsell
Journal:  Neurobiol Aging       Date:  2013-10-09       Impact factor: 4.673

Review 4.  Clinical trial methodologies for disease-modifying therapeutic approaches.

Authors:  Paul S Aisen
Journal:  Neurobiol Aging       Date:  2011-10-08       Impact factor: 4.673

5.  Multimodal classification of Alzheimer's disease and mild cognitive impairment.

Authors:  Daoqiang Zhang; Yaping Wang; Luping Zhou; Hong Yuan; Dinggang Shen
Journal:  Neuroimage       Date:  2011-01-12       Impact factor: 6.556

6.  Predictive markers for AD in a multi-modality framework: an analysis of MCI progression in the ADNI population.

Authors:  Chris Hinrichs; Vikas Singh; Guofan Xu; Sterling C Johnson
Journal:  Neuroimage       Date:  2010-12-10       Impact factor: 6.556

7.  Machine Learning classification of MRI features of Alzheimer's disease and mild cognitive impairment subjects to reduce the sample size in clinical trials.

Authors:  Javier Escudero; John P Zajicek; Emmanuel Ifeachor
Journal:  Conf Proc IEEE Eng Med Biol Soc       Date:  2011

8.  Operationalizing hippocampal volume as an enrichment biomarker for amnestic mild cognitive impairment trials: effect of algorithm, test-retest variability, and cut point on trial cost, duration, and sample size.

Authors:  Peng Yu; Jia Sun; Robin Wolz; Diane Stephenson; James Brewer; Nick C Fox; Patricia E Cole; Clifford R Jack; Derek L G Hill; Adam J Schwarz
Journal:  Neurobiol Aging       Date:  2013-10-03       Impact factor: 4.673

9.  Deep learning-based feature representation for AD/MCI classification.

Authors:  Heung-Il Suk; Dinggang Shen
Journal:  Med Image Comput Comput Assist Interv       Date:  2013

Review 10.  The Alzheimer's Disease Neuroimaging Initiative: a review of papers published since its inception.

Authors:  Michael W Weiner; Dallas P Veitch; Paul S Aisen; Laurel A Beckett; Nigel J Cairns; Robert C Green; Danielle Harvey; Clifford R Jack; William Jagust; Enchi Liu; John C Morris; Ronald C Petersen; Andrew J Saykin; Mark E Schmidt; Leslie Shaw; Li Shen; Judith A Siuciak; Holly Soares; Arthur W Toga; John Q Trojanowski
Journal:  Alzheimers Dement       Date:  2013-08-07       Impact factor: 21.566

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  21 in total

1.  Experimental Design on a Budget for Sparse Linear Models and Applications.

Authors:  Sathya N Ravi; Vamsi K Ithapu; Sterling C Johnson; Vikas Singh
Journal:  JMLR Workshop Conf Proc       Date:  2016-06

Review 2.  Recent publications from the Alzheimer's Disease Neuroimaging Initiative: Reviewing progress toward improved AD clinical trials.

Authors:  Michael W Weiner; Dallas P Veitch; Paul S Aisen; Laurel A Beckett; Nigel J Cairns; Robert C Green; Danielle Harvey; Clifford R Jack; William Jagust; John C Morris; Ronald C Petersen; Andrew J Saykin; Leslie M Shaw; Arthur W Toga; John Q Trojanowski
Journal:  Alzheimers Dement       Date:  2017-03-22       Impact factor: 21.566

3.  MCADNNet: Recognizing Stages of Cognitive Impairment through Efficient Convolutional fMRI and MRI Neural Network Topology Models.

Authors:  Saman Sarraf; Danielle D Desouza; John Anderson; Cristina Saverino
Journal:  IEEE Access       Date:  2019-10-25       Impact factor: 3.367

4.  A deep learning model for early prediction of Alzheimer's disease dementia based on hippocampal magnetic resonance imaging data.

Authors:  Hongming Li; Mohamad Habes; David A Wolk; Yong Fan
Journal:  Alzheimers Dement       Date:  2019-06-11       Impact factor: 21.566

5.  Deep ensemble learning of sparse regression models for brain disease diagnosis.

Authors:  Heung-Il Suk; Seong-Whan Lee; Dinggang Shen
Journal:  Med Image Anal       Date:  2017-01-24       Impact factor: 8.545

Review 6.  A review on neuroimaging-based classification studies and associated feature extraction methods for Alzheimer's disease and its prodromal stages.

Authors:  Saima Rathore; Mohamad Habes; Muhammad Aksam Iftikhar; Amanda Shacklett; Christos Davatzikos
Journal:  Neuroimage       Date:  2017-04-13       Impact factor: 6.556

7.  The Incremental Multiresolution Matrix Factorization Algorithm.

Authors:  Vamsi K Ithapu; Risi Kondor; Sterling C Johnson; Vikas Singh
Journal:  Proc IEEE Comput Soc Conf Comput Vis Pattern Recognit       Date:  2017-07

8.  Limitations of clinical trial sample size estimate by subtraction of two measurements.

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Journal:  Stat Med       Date:  2021-11-01       Impact factor: 2.373

9.  Dimension constraints improve hypothesis testing for large-scale, graph-associated, brain-image data.

Authors:  Tien Vo; Akshay Mishra; Vamsi Ithapu; Vikas Singh; Michael A Newton
Journal:  Biostatistics       Date:  2022-07-18       Impact factor: 5.279

Review 10.  Opportunities and obstacles for deep learning in biology and medicine.

Authors:  Travers Ching; Daniel S Himmelstein; Brett K Beaulieu-Jones; Alexandr A Kalinin; Brian T Do; Gregory P Way; Enrico Ferrero; Paul-Michael Agapow; Michael Zietz; Michael M Hoffman; Wei Xie; Gail L Rosen; Benjamin J Lengerich; Johnny Israeli; Jack Lanchantin; Stephen Woloszynek; Anne E Carpenter; Avanti Shrikumar; Jinbo Xu; Evan M Cofer; Christopher A Lavender; Srinivas C Turaga; Amr M Alexandari; Zhiyong Lu; David J Harris; Dave DeCaprio; Yanjun Qi; Anshul Kundaje; Yifan Peng; Laura K Wiley; Marwin H S Segler; Simina M Boca; S Joshua Swamidass; Austin Huang; Anthony Gitter; Casey S Greene
Journal:  J R Soc Interface       Date:  2018-04       Impact factor: 4.293

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