Literature DB >> 26092703

Using Ambystoma mexicanum (Mexican axolotl) embryos, chemical genetics, and microarray analysis to identify signaling pathways associated with tissue regeneration.

Larissa V Ponomareva1, Antony Athippozhy2, Jon S Thorson1, S Randal Voss3.   

Abstract

Amphibian vertebrates are important models in regenerative biology because they present exceptional regenerative capabilities throughout life. However, it takes considerable effort to rear amphibians to juvenile and adult stages for regeneration studies, and the relatively large sizes that frogs and salamanders achieve during development make them difficult to use in chemical screens. Here, we introduce a new tail regeneration model using late stage Mexican axolotl embryos. We show that axolotl embryos completely regenerate amputated tails in 7days before they exhaust their yolk supply and begin to feed. Further, we show that axolotl embryos can be efficiently reared in microtiter plates to achieve moderate throughput screening of soluble chemicals to investigate toxicity and identify molecules that alter regenerative outcome. As proof of principle, we identified integration 1 / wingless (Wnt), transforming growth factor beta (Tgf-β), and fibroblast growth factor (Fgf) pathway antagonists that completely block tail regeneration and additional chemicals that significantly affected tail outgrowth. Furthermore, we used microarray analysis to show that inhibition of Wnt signaling broadly affects transcription of genes associated with Wnt, Fgf, Tgf-β, epidermal growth factor (Egf), Notch, nerve growth factor (Ngf), homeotic gene (Hox), rat sarcoma/mitogen-activated protein kinase (Ras/Mapk), myelocytomatosis viral oncogene (Myc), tumor protein 53 (p53), and retinoic acid (RA) pathways. Punctuated changes in the expression of genes known to regulate vertebrate development were observed; this suggests the tail regeneration transcriptional program is hierarchically structured and temporally ordered. Our study establishes the axolotl as a chemical screening model to investigate signaling pathways associated with tissue regeneration.
Copyright © 2015 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Axolotl; C59; Chemical screening; Regeneration; Wnt

Mesh:

Year:  2015        PMID: 26092703      PMCID: PMC4662883          DOI: 10.1016/j.cbpc.2015.06.004

Source DB:  PubMed          Journal:  Comp Biochem Physiol C Toxicol Pharmacol        ISSN: 1532-0456            Impact factor:   3.228


  31 in total

1.  Distinct Wnt signaling pathways have opposing roles in appendage regeneration.

Authors:  Cristi L Stoick-Cooper; Gilbert Weidinger; Kimberly J Riehle; Charlotte Hubbert; Michael B Major; Nelson Fausto; Randall T Moon
Journal:  Development       Date:  2006-12-21       Impact factor: 6.868

2.  Early gene expression during natural spinal cord regeneration in the salamander Ambystoma mexicanum.

Authors:  James R Monaghan; John A Walker; Robert B Page; Srikrishna Putta; Christopher K Beachy; S Randal Voss
Journal:  J Neurochem       Date:  2007-01-04       Impact factor: 5.372

Review 3.  The Xenopus tadpole: a new model for regeneration research.

Authors:  J M W Slack; G Lin; Y Chen
Journal:  Cell Mol Life Sci       Date:  2008-01       Impact factor: 9.261

4.  Gene expression and functional analysis of zebrafish larval fin fold regeneration.

Authors:  Nozomi Yoshinari; Takashi Ishida; Akira Kudo; Atsushi Kawakami
Journal:  Dev Biol       Date:  2008-10-10       Impact factor: 3.582

5.  Wnt/β-catenin signaling defines organizing centers that orchestrate growth and differentiation of the regenerating zebrafish caudal fin.

Authors:  Daniel Wehner; Wiebke Cizelsky; Mohankrishna Dalvoy Vasudevaro; Günes Ozhan; Christa Haase; Birgit Kagermeier-Schenk; Alexander Röder; Richard I Dorsky; Enrico Moro; Francesco Argenton; Michael Kühl; Gilbert Weidinger
Journal:  Cell Rep       Date:  2014-01-30       Impact factor: 9.423

6.  Sal-Site: integrating new and existing ambystomatid salamander research and informational resources.

Authors:  Jeramiah J Smith; Srikrishna Putta; John A Walker; D Kevin Kump; Amy K Samuels; James R Monaghan; David W Weisrock; Chuck Staben; S Randal Voss
Journal:  BMC Genomics       Date:  2005-12-16       Impact factor: 3.969

7.  Microarray and cDNA sequence analysis of transcription during nerve-dependent limb regeneration.

Authors:  James R Monaghan; Leonard G Epp; Srikrishna Putta; Robert B Page; John A Walker; Chris K Beachy; Wei Zhu; Gerald M Pao; Inder M Verma; Tony Hunter; Susan V Bryant; David M Gardiner; Tim T Harkins; S Randal Voss
Journal:  BMC Biol       Date:  2009-01-13       Impact factor: 7.431

8.  Gene expression patterns specific to the regenerating limb of the Mexican axolotl.

Authors:  James R Monaghan; Antony Athippozhy; Ashley W Seifert; Sri Putta; Arnold J Stromberg; Malcolm Maden; David M Gardiner; S Randal Voss
Journal:  Biol Open       Date:  2012-07-27       Impact factor: 2.422

9.  Small molecule-mediated disruption of Wnt-dependent signaling in tissue regeneration and cancer.

Authors:  Baozhi Chen; Michael E Dodge; Wei Tang; Jianming Lu; Zhiqiang Ma; Chih-Wei Fan; Shuguang Wei; Wayne Hao; Jessica Kilgore; Noelle S Williams; Michael G Roth; James F Amatruda; Chuo Chen; Lawrence Lum
Journal:  Nat Chem Biol       Date:  2009-01-04       Impact factor: 15.040

10.  A phenotypic screen in zebrafish identifies a novel small-molecule inducer of ectopic tail formation suggestive of alterations in non-canonical Wnt/PCP signaling.

Authors:  Evelien Gebruers; María Lorena Cordero-Maldonado; Alexander I Gray; Carol Clements; Alan L Harvey; Ruangelie Edrada-Ebel; Peter A M de Witte; Alexander D Crawford; Camila V Esguerra
Journal:  PLoS One       Date:  2013-12-11       Impact factor: 3.240

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  19 in total

1.  Mccrearamycins A-D, Geldanamycin-Derived Cyclopentenone Macrolactams from an Eastern Kentucky Abandoned Coal Mine Microbe.

Authors:  Xiachang Wang; Yinan Zhang; Larissa V Ponomareva; Qingchao Qiu; Ryan Woodcock; Sherif I Elshahawi; Xiabin Chen; Ziyuan Zhou; Bruce E Hatcher; James C Hower; Chang-Guo Zhan; Sean Parkin; Madan K Kharel; S Randal Voss; Khaled A Shaaban; Jon S Thorson
Journal:  Angew Chem Int Ed Engl       Date:  2017-01-31       Impact factor: 15.336

2.  Amputation-induced reactive oxygen species signaling is required for axolotl tail regeneration.

Authors:  Nour W Al Haj Baddar; Adarsh Chithrala; S Randal Voss
Journal:  Dev Dyn       Date:  2018-12-21       Impact factor: 3.780

3.  Baraphenazines A-G, Divergent Fused Phenazine-Based Metabolites from a Himalayan Streptomyces.

Authors:  Xiachang Wang; Muhammad Abbas; Yinan Zhang; Sherif I Elshahawi; Larissa V Ponomareva; Zheng Cui; Steven G Van Lanen; Imran Sajid; S Randal Voss; Khaled A Shaaban; Jon S Thorson
Journal:  J Nat Prod       Date:  2019-05-22       Impact factor: 4.050

4.  Comparative transcriptomics of limb regeneration: Identification of conserved expression changes among three species of Ambystoma.

Authors:  Varun B Dwaraka; Jeramiah J Smith; M Ryan Woodcock; S Randal Voss
Journal:  Genomics       Date:  2018-08-06       Impact factor: 5.736

5.  Salamander-like tail regeneration in the West African lungfish.

Authors:  Kellen Matos Verissimo; Louise Neiva Perez; Aline Cutrim Dragalzew; Gayani Senevirathne; Sylvain Darnet; Wainna Renata Barroso Mendes; Ciro Ariel Dos Santos Neves; Erika Monteiro Dos Santos; Cassia Nazare de Sousa Moraes; Ahmed Elewa; Neil Shubin; Nadia Belinda Fröbisch; Josane de Freitas Sousa; Igor Schneider
Journal:  Proc Biol Sci       Date:  2020-09-16       Impact factor: 5.349

6.  Structure Determination, Functional Characterization, and Biosynthetic Implications of Nybomycin Metabolites from a Mining Reclamation Site-Associated Streptomyces.

Authors:  Xiachang Wang; Sherif I Elshahawi; Larissa V Ponomareva; Qing Ye; Yang Liu; Gregory C Copley; James C Hower; Bruce E Hatcher; Madan K Kharel; Steven G Van Lanen; Qing-Bai She; S Randal Voss; Jon S Thorson; Khaled A Shaaban
Journal:  J Nat Prod       Date:  2019-12-13       Impact factor: 4.050

7.  OleD Loki as a Catalyst for Hydroxamate Glycosylation.

Authors:  Ryan R Hughes; Khaled A Shaaban; Larissa V Ponomareva; Jamie Horn; Chunhui Zhang; Chang-Guo Zhan; S Randal Voss; Markos Leggas; Jon S Thorson
Journal:  Chembiochem       Date:  2019-11-26       Impact factor: 3.164

Review 8.  Towards comparative analyses of salamander limb regeneration.

Authors:  Varun B Dwaraka; S Randal Voss
Journal:  J Exp Zool B Mol Dev Evol       Date:  2019-10-04       Impact factor: 2.656

9.  Chemical genetics of regeneration: Contrasting temporal effects of CoCl2 on axolotl tail regeneration.

Authors:  Nour W Al Haj Baddar; Varun B Dwaraka; Larissa V Ponomareva; Jon S Thorson; S Randal Voss
Journal:  Dev Dyn       Date:  2021-01-12       Impact factor: 3.780

10.  Himalaquinones A-G, Angucyclinone-Derived Metabolites Produced by the Himalayan Isolate Streptomyces sp. PU-MM59.

Authors:  Yongyong Zhang; Mohsin T Cheema; Larissa V Ponomareva; Qing Ye; Tao Liu; Imran Sajid; Jürgen Rohr; Qing-Bai She; S Randal Voss; Jon S Thorson; Khaled A Shaaban
Journal:  J Nat Prod       Date:  2021-06-25       Impact factor: 4.050

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