Literature DB >> 26092634

Towards an Integrative Morpho-molecular Classification of the Collodaria (Polycystinea, Radiolaria).

Tristan Biard1, Loïc Pillet2, Johan Decelle3, Camille Poirier4, Noritoshi Suzuki5, Fabrice Not2.   

Abstract

Collodaria are ubiquitous and abundant marine radiolarian (Rhizaria) protists. They occur as either large colonies or solitary specimens, and, unlike most radiolarians, some taxa lack silicified structures. Collodarians are known to play an important role in oceanic food webs as both active predators and hosts of symbiotic microalgae, yet very little is known about their diversity and evolution. Taxonomic delineation of collodarians is challenging and only a few species have been genetically characterized. Here we investigated collodarian diversity using phylogenetic analyses of both nuclear small (18S) and large (28S) subunits of the ribosomal DNA, including 124 new sequences from 75 collodarians sampled worldwide. The resulting molecular phylogeny was compared to morphology-based classification. Our analyses distinguished the monophyletic clade of skeleton-less and spicule-bearing Sphaerozoidae from the sister clades Collosphaeridae (skeleton-bearing) and Collophidiidae (skeleton-less), while the Thalassicollidae was not retrieved as a monophyletic clade. Detailed morphological examination with electron microscopy combined with molecular analyses revealed many discrepancies, such as a mix between solitary and colonial species, co-existence of skeleton-less and skeleton-bearing specimens within the Collosphaeridae, as well as complex intraspecific variability in silicified structures. Such observations challenge a morphology-based classification and highlight the pertinence of an integrative taxonomic approach to study collodarian diversity.
Copyright © 2015 Elsevier GmbH. All rights reserved.

Keywords:  Collodaria; Radiolaria; integrative taxonomy; molecular phylogeny; polycystine; single-cell.

Mesh:

Substances:

Year:  2015        PMID: 26092634     DOI: 10.1016/j.protis.2015.05.002

Source DB:  PubMed          Journal:  Protist        ISSN: 1434-4610


  6 in total

1.  Biogeography and diversity of Collodaria (Radiolaria) in the global ocean.

Authors:  Tristan Biard; Estelle Bigeard; Stéphane Audic; Julie Poulain; Andres Gutierrez-Rodriguez; Stéphane Pesant; Lars Stemmann; Fabrice Not
Journal:  ISME J       Date:  2017-03-24       Impact factor: 10.302

2.  Multigene phylogeny and cell evolution of chromist infrakingdom Rhizaria: contrasting cell organisation of sister phyla Cercozoa and Retaria.

Authors:  Thomas Cavalier-Smith; Ema E Chao; Rhodri Lewis
Journal:  Protoplasma       Date:  2018-04-17       Impact factor: 3.356

3.  Bacterial Succession on Sinking Particles in the Ocean's Interior.

Authors:  Erik A Pelve; Kristina M Fontanez; Edward F DeLong
Journal:  Front Microbiol       Date:  2017-11-24       Impact factor: 5.640

4.  A de novo approach to disentangle partner identity and function in holobiont systems.

Authors:  Arnaud Meng; Camille Marchet; Erwan Corre; Pierre Peterlongo; Adriana Alberti; Corinne Da Silva; Patrick Wincker; Eric Pelletier; Ian Probert; Johan Decelle; Stéphane Le Crom; Fabrice Not; Lucie Bittner
Journal:  Microbiome       Date:  2018-06-09       Impact factor: 14.650

Review 5.  Diversity and ecology of Radiolaria in modern oceans.

Authors:  Tristan Biard
Journal:  Environ Microbiol       Date:  2022-04-24       Impact factor: 5.476

6.  Intra-genomic rRNA gene variability of Nassellaria and Spumellaria (Rhizaria, Radiolaria) assessed by Sanger, MinION and Illumina sequencing.

Authors:  Miguel M Sandin; Sarah Romac; Fabrice Not
Journal:  Environ Microbiol       Date:  2022-06-05       Impact factor: 5.476

  6 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.