Literature DB >> 26090213

Crystal structure of bis-(prop-2-yn-1-yl) 5-nitro-isophthalate.

K S Ezhilarasi1, Sivasamy Selvarani2, Perumal Rajakumar2, B K Revathi1, G Usha1.   

Abstract

The whole mol-ecule of the title compound, C14H9NO6, is generated by twofold rotation symmetry; the twofold axis bis-ects the nitro group and the benzene ring. The nitro group is inclined to the benzene ring by 14.42 (9)°. The prop-2-yn-1-yl groups are inclined to the benzene ring by 13 (2)° and to each other by 24 (3)°; one directed above the plane of the benzene ring and the other below. In the crystal, mol-ecules are linked via pairs of C-H⋯O hydrogen bonds, forming inversion dimers with an R 2 (2)(18) ring motif. The dimers are linked by further C-H⋯O hydrogen bonds, forming sheets lying parallel to (100).

Entities:  

Keywords:  5-nitro­isophthalate; C—H⋯O hydrogen bonding; crystal structure; prop-2-yn-1-yl; twofold rotation symmetry

Year:  2015        PMID: 26090213      PMCID: PMC4459362          DOI: 10.1107/S2056989015009846

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For the biological activities of carboxyl­ates, see: Choudhary et al. (2002 ▸). For the uses and properties of nitro­aromatics, see: Lee et al. (2013 ▸); Somerville et al. (1995 ▸).

Experimental

Crystal data

C14H9NO6 M = 287.22 Orthorhombic, a = 6.679 (5) Å b = 11.679 (5) Å c = 16.503 (5) Å V = 1287.3 (12) Å3 Z = 4 Mo Kα radiation μ = 0.12 mm−1 T = 293 K 0.30 × 0.25 × 0.20 mm

Data collection

Bruker Kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2008 ▸) T min = 0.965, T max = 0.977 6369 measured reflections 1613 independent reflections 1316 reflections with I > 2σ(I) R int = 0.021

Refinement

R[F 2 > 2σ(F 2)] = 0.038 wR(F 2) = 0.136 S = 0.73 1523 reflections 98 parameters H-atom parameters constrained Δρmax = 0.26 e Å−3 Δρmin = −0.21 e Å−3

Data collection: APEX2 (Bruker, 2008 ▸); cell refinement: SAINT (Bruker, 2008 ▸); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▸); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▸); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▸); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▸). Crystal structure: contains datablock(s) I, Global. DOI: 10.1107/S2056989015009846/su5137sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015009846/su5137Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989015009846/su5137Isup3.cml Click here for additional data file. x y z . DOI: 10.1107/S2056989015009846/su5137fig1.tif The mol­ecular structure of the title compound, with atom labelling. Displacement ellipsoids are drawn at the 30% probability level. The unlabelled atoms are related to the labelled atoms by twofold rotation symmetry [symmetry code: (i) −x + , −y + , z]. Click here for additional data file. a . DOI: 10.1107/S2056989015009846/su5137fig2.tif A view along the a axis of the crystal packing of the title compound. The dashed lines indicate hydrogen bonds (see Table 1 for details). CCDC reference: 1402145 Additional supporting information: crystallographic information; 3D view; checkCIF report
C14H9NO6F(000) = 592
Mr = 287.22Dx = 1.482 Mg m3
Orthorhombic, PccnMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ab 2acθ = 2.5–28.4°
a = 6.679 (5) ŵ = 0.12 mm1
b = 11.679 (5) ÅT = 293 K
c = 16.503 (5) ÅBlock, colourless
V = 1287.3 (12) Å30.30 × 0.25 × 0.20 mm
Z = 4
Bruker Kappa APEXII CCD diffractometer1613 independent reflections
Radiation source: fine-focus sealed tube1316 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.021
ω and φ scanθmax = 28.4°, θmin = 2.5°
Absorption correction: multi-scan (SADABS; Bruker, 2008)h = −8→8
Tmin = 0.965, Tmax = 0.977k = −15→7
6369 measured reflectionsl = −12→22
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.038H-atom parameters constrained
wR(F2) = 0.136w = 1/[σ2(Fo2) + (0.1246P)2 + 0.5331P] where P = (Fo2 + 2Fc2)/3
S = 0.73(Δ/σ)max < 0.001
1523 reflectionsΔρmax = 0.26 e Å3
98 parametersΔρmin = −0.21 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.030 (5)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.75000.25000.05352 (9)0.0336 (4)
C20.90289 (17)0.30592 (10)0.01386 (7)0.0351 (3)
H21.00330.34330.04260.042*
C30.90264 (16)0.30486 (10)−0.07063 (7)0.0329 (3)
C40.75000.2500−0.11315 (9)0.0328 (4)
H40.75000.2500−0.16950.039*
C51.07371 (18)0.36348 (11)−0.11169 (7)0.0377 (3)
C61.2259 (2)0.41344 (12)−0.23491 (7)0.0431 (3)
H6A1.25270.4888−0.21270.052*
H6B1.34500.3669−0.22840.052*
C71.17465 (19)0.42270 (11)−0.32014 (8)0.0412 (3)
C81.1422 (2)0.43439 (16)−0.38961 (9)0.0565 (4)
H81.11660.4436−0.44460.068*
N10.75000.25000.14284 (8)0.0377 (4)
O10.86053 (16)0.31731 (9)0.17767 (6)0.0525 (3)
O31.21118 (18)0.40639 (12)−0.07644 (6)0.0700 (4)
O21.05835 (13)0.36103 (8)−0.19240 (5)0.0404 (3)
U11U22U33U12U13U23
C10.0357 (8)0.0445 (8)0.0205 (8)0.0030 (6)0.0000.000
C20.0344 (6)0.0445 (6)0.0263 (6)−0.0024 (4)−0.0023 (4)−0.0013 (4)
C30.0328 (6)0.0407 (6)0.0254 (6)−0.0011 (4)0.0013 (4)0.0007 (4)
C40.0355 (8)0.0411 (8)0.0218 (7)−0.0010 (6)0.0000.000
C50.0378 (6)0.0483 (7)0.0270 (6)−0.0062 (5)0.0000 (5)0.0015 (5)
C60.0392 (7)0.0559 (7)0.0342 (7)−0.0110 (5)0.0065 (5)0.0047 (5)
C70.0401 (6)0.0463 (6)0.0370 (7)−0.0021 (5)0.0090 (5)0.0045 (5)
C80.0549 (8)0.0771 (10)0.0376 (7)−0.0064 (7)0.0045 (6)0.0094 (7)
N10.0369 (7)0.0529 (8)0.0234 (7)0.0042 (6)0.0000.000
O10.0568 (6)0.0728 (7)0.0278 (5)−0.0089 (5)−0.0065 (4)−0.0078 (4)
O30.0606 (7)0.1147 (11)0.0345 (5)−0.0461 (7)−0.0069 (5)0.0068 (6)
O20.0393 (5)0.0563 (6)0.0256 (5)−0.0124 (4)0.0048 (3)−0.0012 (3)
C1—C2i1.3775 (15)C5—O21.3363 (15)
C1—C21.3775 (15)C6—C71.4517 (18)
C1—N11.474 (2)C6—O21.4555 (15)
C2—C31.3944 (16)C6—H6A0.9700
C2—H20.9300C6—H6B0.9700
C3—C41.3937 (15)C7—C81.175 (2)
C3—C51.4944 (17)C8—H80.9300
C4—C3i1.3937 (15)N1—O11.2220 (12)
C4—H40.9300N1—O1i1.2220 (12)
C5—O31.1970 (17)
C2i—C1—C2123.27 (14)O2—C5—C3112.55 (10)
C2i—C1—N1118.36 (7)C7—C6—O2108.50 (11)
C2—C1—N1118.36 (7)C7—C6—H6A110.0
C1—C2—C3118.03 (11)O2—C6—H6A110.0
C1—C2—H2121.0C7—C6—H6B110.0
C3—C2—H2121.0O2—C6—H6B110.0
C4—C3—C2120.56 (11)H6A—C6—H6B108.4
C4—C3—C5122.79 (11)C8—C7—C6176.19 (14)
C2—C3—C5116.64 (10)C7—C8—H8180.0
C3—C4—C3i119.53 (14)O1—N1—O1i123.89 (15)
C3—C4—H4120.2O1—N1—C1118.06 (7)
C3i—C4—H4120.2O1i—N1—C1118.06 (7)
O3—C5—O2123.52 (11)C5—O2—C6114.36 (9)
O3—C5—C3123.92 (12)
C2i—C1—C2—C3−0.45 (8)C2—C3—C5—O2−178.24 (10)
N1—C1—C2—C3179.55 (8)O2—C6—C7—C8166 (2)
C1—C2—C3—C40.91 (15)C2i—C1—N1—O1−165.80 (8)
C1—C2—C3—C5−178.32 (9)C2—C1—N1—O114.20 (8)
C2—C3—C4—C3i−0.46 (8)C2i—C1—N1—O1i14.20 (8)
C5—C3—C4—C3i178.71 (12)C2—C1—N1—O1i−165.80 (8)
C4—C3—C5—O3−176.32 (13)O3—C5—O2—C61.09 (19)
C2—C3—C5—O32.9 (2)C3—C5—O2—C6−177.80 (10)
C4—C3—C5—O22.56 (15)C7—C6—O2—C5−170.29 (11)
D—H···AD—HH···AD···AD—H···A
C6—H6A···O1ii0.972.463.334 (2)150
C6—H6B···O1iii0.972.573.313 (2)134
C8—H8···O3iii0.932.503.251 (2)138
Table 1

Hydrogen-bond geometry (, )

DHA DHHA D A DHA
C6H6AO1i 0.972.463.334(2)150
C6H6BO1ii 0.972.573.313(2)134
C8H8O3ii 0.932.503.251(2)138

Symmetry codes: (i) ; (ii) .

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