Literature DB >> 26090212

Crystal structure of (E)-3-allyl-2-sulfanyl-idene-5-[(thio-phen-2-yl)methyl-idene]thia-zolidin-4-one.

Rahhal El Ajlaoui1, El Mostapha Rakib1, Souad Mojahidi1, Mohamed Saadi2, Lahcen El Ammari2.   

Abstract

Mol-ecules of the title compound, C11H9NOS3, are built up by one thio-phene and one 2-thioxa-thia-zolidin-4-one ring which are connected by a methyl-ene bridge. In addition, there is an allyl substituent attached to nitro-gen. The two rings are almost coplanar, making a dihedral angle between them of 0.76 (11)°. The allyl group is oriented perpendicular to the mean plane through both ring systems. The crystal structure exhibits inversion dimers in which mol-ecules are linked by pairs of C-H⋯O hydrogen bonds. Additional π-π inter-actions between neighboring thio-phene and 2-thioxa-thia-zolidin-4-one rings [inter-centroid distance = 3.694 (2) Å] lead to the formation of a three-dimensional network.

Entities:  

Keywords:  2-thioxa­thia­zolidin-4-one; crystal structure; hydrogen bonding; rhodanine derivative; π–π inter­actions

Year:  2015        PMID: 26090212      PMCID: PMC4459307          DOI: 10.1107/S2056989015010166

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For pharmacological activities such as anti­microbial and anti-inflammatory of aryl­idene derivatives of rhodanine (2-thioxo-1,3-thia­zolidin-4-one), see: Soltero-Higgin et al. (2004 ▸); Hu et al. (2004 ▸); Nasr & Said (2003 ▸); Johnson et al. (2001 ▸); Sortino et al. (2007 ▸); Insuasty et al. (2010 ▸); Tomasic & Masic (2009 ▸).

Experimental

Crystal data

C11H9NOS3 M = 267.37 Triclinic, a = 6.7342 (2) Å b = 7.3762 (2) Å c = 13.2917 (5) Å α = 79.386 (2)° β = 80.104 (2)° γ = 68.908 (1)° V = 601.44 (3) Å3 Z = 2 Mo Kα radiation μ = 0.59 mm−1 T = 296 K 0.37 × 0.35 × 0.28 mm

Data collection

Bruker X8 APEX diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▸) T min = 0.700, T max = 0.746 25223 measured reflections 3514 independent reflections 2557 reflections with I > 2σ(I) R int = 0.042

Refinement

R[F 2 > 2σ(F 2)] = 0.043 wR(F 2) = 0.111 S = 1.07 3514 reflections 145 parameters H-atom parameters constrained Δρmax = 0.35 e Å−3 Δρmin = −0.26 e Å−3

Data collection: APEX2 (Bruker, 2009 ▸); cell refinement: SAINT (Bruker, 2009 ▸); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▸); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▸); molecular graphics: ORTEPIII (Burnett & Johnson, 1996 ▸) and ORTEP-3 for Windows (Farrugia, 2012 ▸); software used to prepare material for publication: PLATON (Spek, 2009 ▸) and publCIF (Westrip, 2010 ▸). Crystal structure: contains datablock(s) I. DOI: 10.1107/S2056989015010166/im2466sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015010166/im2466Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989015010166/im2466Isup3.cml Click here for additional data file. . DOI: 10.1107/S2056989015010166/im2466fig1.tif Mol­ecular structure of the title compound with displacement ellipsoids drawn at the 50% probability level. H atoms are represented as small circles of arbitrary radius. Click here for additional data file. . DOI: 10.1107/S2056989015010166/im2466fig2.tif Partial crystal packing of the title compound showing hydrogen bonds and π–π inter­actions between mol­ecules. CCDC reference: 1403058 Additional supporting information: crystallographic information; 3D view; checkCIF report
C11H9NOS3Z = 2
Mr = 267.37F(000) = 276
Triclinic, P1Dx = 1.476 Mg m3
a = 6.7342 (2) ÅMo Kα radiation, λ = 0.71073 Å
b = 7.3762 (2) ÅCell parameters from 3514 reflections
c = 13.2917 (5) Åθ = 3.0–30.0°
α = 79.386 (2)°µ = 0.59 mm1
β = 80.104 (2)°T = 296 K
γ = 68.908 (1)°Block, yellow
V = 601.44 (3) Å30.37 × 0.35 × 0.28 mm
Bruker X8 APEX diffractometer3514 independent reflections
Radiation source: fine-focus sealed tube2557 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.042
φ and ω scansθmax = 30.0°, θmin = 3.0°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −9→9
Tmin = 0.700, Tmax = 0.746k = −10→10
25223 measured reflectionsl = −18→18
Refinement on F20 restraints
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.043H-atom parameters constrained
wR(F2) = 0.111w = 1/[σ2(Fo2) + (0.0384P)2 + 0.3716P] where P = (Fo2 + 2Fc2)/3
S = 1.07(Δ/σ)max < 0.001
3514 reflectionsΔρmax = 0.35 e Å3
145 parametersΔρmin = −0.26 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/Ueq
C10.1345 (4)0.1860 (4)0.70306 (19)0.0518 (6)
H1−0.00460.20330.73420.062*
C20.3105 (4)0.0861 (4)0.75114 (18)0.0523 (6)
H20.30580.02670.81920.063*
C30.5018 (4)0.0808 (3)0.68783 (17)0.0428 (5)
H30.63720.01820.70940.051*
C40.4669 (3)0.1785 (3)0.59025 (16)0.0350 (4)
C50.6327 (3)0.1940 (3)0.50925 (16)0.0358 (4)
H50.77180.13210.52640.043*
C60.6167 (3)0.2849 (3)0.41203 (16)0.0341 (4)
C70.8086 (3)0.2828 (3)0.33909 (16)0.0366 (4)
C80.5339 (3)0.4692 (3)0.23605 (17)0.0399 (5)
C90.9117 (4)0.4146 (4)0.15934 (19)0.0491 (6)
H9A0.85500.54080.11810.059*
H9B1.03550.41410.18760.059*
C100.9801 (6)0.2599 (5)0.0927 (2)0.0743 (9)
H100.87400.23920.06460.089*
C111.1737 (7)0.1513 (6)0.0701 (3)0.1111 (16)
H11A1.28450.16740.09670.133*
H11B1.20380.05620.02720.133*
N10.7483 (3)0.3913 (3)0.24437 (13)0.0382 (4)
O10.9933 (2)0.2023 (3)0.35541 (13)0.0515 (4)
S10.19548 (9)0.27676 (9)0.57905 (5)0.04606 (16)
S20.38596 (8)0.41472 (8)0.35129 (4)0.03895 (14)
S30.41977 (12)0.59688 (12)0.13403 (5)0.0646 (2)
U11U22U33U12U13U23
C10.0437 (13)0.0519 (14)0.0552 (15)−0.0171 (11)0.0135 (11)−0.0117 (11)
C20.0583 (15)0.0566 (14)0.0374 (12)−0.0213 (12)0.0061 (11)−0.0020 (10)
C30.0425 (12)0.0437 (12)0.0389 (11)−0.0123 (10)−0.0042 (9)−0.0028 (9)
C40.0343 (10)0.0315 (10)0.0392 (11)−0.0108 (8)−0.0029 (8)−0.0065 (8)
C50.0316 (10)0.0343 (10)0.0406 (11)−0.0101 (8)−0.0032 (8)−0.0054 (8)
C60.0304 (9)0.0340 (10)0.0377 (10)−0.0111 (8)−0.0022 (8)−0.0060 (8)
C70.0337 (10)0.0393 (11)0.0389 (11)−0.0156 (9)−0.0002 (8)−0.0077 (9)
C80.0402 (11)0.0412 (11)0.0394 (11)−0.0151 (9)−0.0030 (9)−0.0063 (9)
C90.0447 (13)0.0555 (14)0.0469 (13)−0.0242 (11)0.0066 (10)−0.0024 (10)
C100.084 (2)0.086 (2)0.0568 (17)−0.0438 (19)0.0266 (15)−0.0216 (15)
C110.133 (4)0.086 (3)0.067 (2)0.002 (2)0.025 (2)−0.0083 (19)
N10.0360 (9)0.0424 (9)0.0370 (9)−0.0165 (8)0.0006 (7)−0.0051 (7)
O10.0298 (8)0.0662 (11)0.0532 (10)−0.0130 (7)−0.0035 (7)−0.0032 (8)
S10.0340 (3)0.0453 (3)0.0515 (3)−0.0083 (2)−0.0008 (2)−0.0031 (2)
S20.0291 (2)0.0432 (3)0.0410 (3)−0.0101 (2)−0.0029 (2)−0.0024 (2)
S30.0557 (4)0.0842 (5)0.0448 (4)−0.0184 (4)−0.0133 (3)0.0101 (3)
C1—C21.347 (4)C7—O11.208 (2)
C1—S11.701 (3)C7—N11.400 (3)
C1—H10.9300C8—N11.364 (3)
C2—C31.405 (3)C8—S31.638 (2)
C2—H20.9300C8—S21.743 (2)
C3—C41.377 (3)C9—C101.468 (4)
C3—H30.9300C9—N11.468 (3)
C4—C51.433 (3)C9—H9A0.9700
C4—S11.729 (2)C9—H9B0.9700
C5—C61.344 (3)C10—C111.278 (5)
C5—H50.9300C10—H100.9300
C6—C71.473 (3)C11—H11A0.9300
C6—S21.749 (2)C11—H11B0.9300
C2—C1—S1112.36 (18)N1—C8—S3126.87 (17)
C2—C1—H1123.8N1—C8—S2110.96 (16)
S1—C1—H1123.8S3—C8—S2122.17 (13)
C1—C2—C3113.0 (2)C10—C9—N1113.0 (2)
C1—C2—H2123.5C10—C9—H9A109.0
C3—C2—H2123.5N1—C9—H9A109.0
C4—C3—C2112.6 (2)C10—C9—H9B109.0
C4—C3—H3123.7N1—C9—H9B109.0
C2—C3—H3123.7H9A—C9—H9B107.8
C3—C4—C5124.61 (19)C11—C10—C9125.3 (4)
C3—C4—S1110.43 (16)C11—C10—H10117.4
C5—C4—S1124.96 (16)C9—C10—H10117.4
C6—C5—C4129.47 (19)C10—C11—H11A120.0
C6—C5—H5115.3C10—C11—H11B120.0
C4—C5—H5115.3H11A—C11—H11B120.0
C5—C6—C7121.35 (19)C8—N1—C7116.63 (17)
C5—C6—S2128.78 (16)C8—N1—C9122.99 (19)
C7—C6—S2109.86 (15)C7—N1—C9120.37 (18)
O1—C7—N1123.06 (19)C1—S1—C491.64 (11)
O1—C7—C6126.9 (2)C8—S2—C692.49 (10)
N1—C7—C6110.02 (17)
D—H···AD—HH···AD···AD—H···A
C3—H3···O1i0.932.543.304 (3)140
Table 1

Hydrogen-bond geometry (, )

DHA DHHA D A DHA
C3H3O1i 0.932.543.304(3)140

Symmetry code: (i) .

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