Literature DB >> 26090208

Crystal structure of oryzalin.

Gihaeng Kang1, Jineun Kim1, Youngeun Jeon1, Tae Ho Kim1.   

Abstract

The title compound, C12H18N4O6S (systematic name: 4-di-propyl-amino-3,5-di-nitro-benzene-sulfonamide), is a sulfonamide with herbicidal properties marketed as oryzalin. The dihedral angles between the benzene ring and the mean planes of the nitro groups are 26.15 (11) and 54.80 (9)°. The propyl arms of the di-propyl-amino substituent lie on opposite sides of this ring plane. In the crystal, N-H⋯O and C-H⋯O hydrogen bonds generate a three-dimensional network.

Entities:  

Keywords:  crystal structure; herbicidal properties; hydrogen bonding; oryzalin; sulfonamide

Year:  2015        PMID: 26090208      PMCID: PMC4459385          DOI: 10.1107/S205698901500955X

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For information on the toxicity and herbicidal properties of the title compound, see: Naqvi & Leung (1983 ▸). For related crystal structures, see: O’Connell & Maslen (1967 ▸); Tremayne et al. (2002 ▸).

Experimental

Crystal data

C12H18N4O6S M = 346.36 Triclinic, a = 7.6057 (2) Å b = 8.2463 (2) Å c = 12.8657 (2) Å α = 73.901 (1)° β = 86.059 (1)° γ = 83.549 (1)° V = 769.77 (3) Å3 Z = 2 Mo Kα radiation μ = 0.25 mm−1 T = 173 K 0.49 × 0.17 × 0.05 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▸) T min = 0.888, T max = 0.988 14199 measured reflections 3778 independent reflections 3506 reflections with I > 2σ(I) R int = 0.021

Refinement

R[F 2 > 2σ(F 2)] = 0.033 wR(F 2) = 0.090 S = 1.05 3778 reflections 218 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.29 e Å−3 Δρmin = −0.42 e Å−3

Data collection: APEX2 (Bruker, 2009 ▸); cell refinement: SAINT (Bruker, 2009 ▸); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▸); program(s) used to refine structure: SHELXTL; molecular graphics: DIAMOND (Brandenburg, 2010 ▸); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S205698901500955X/sj5462sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S205698901500955X/sj5462Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S205698901500955X/sj5462Isup3.cml Click here for additional data file. . DOI: 10.1107/S205698901500955X/sj5462fig1.tif The asymmetric unit of the title compound with the atom numbering scheme. Displacement ellipsoids are drawn at the 50% probability level. H atoms are shown as small spheres of arbitrary radius. Click here for additional data file. a . DOI: 10.1107/S205698901500955X/sj5462fig2.tif Crystal packing viewed along the a axis. The inter­molecular N—H⋯O and C—H⋯O hydrogen bonds are shown as dashed lines. CCDC reference: 1401628 Additional supporting information: crystallographic information; 3D view; checkCIF report
C12H18N4O6SZ = 2
Mr = 346.36F(000) = 364
Triclinic, P1Dx = 1.494 Mg m3
a = 7.6057 (2) ÅMo Kα radiation, λ = 0.71073 Å
b = 8.2463 (2) ÅCell parameters from 9733 reflections
c = 12.8657 (2) Åθ = 2.6–28.3°
α = 73.901 (1)°µ = 0.25 mm1
β = 86.059 (1)°T = 173 K
γ = 83.549 (1)°Block, red
V = 769.77 (3) Å30.49 × 0.17 × 0.05 mm
Bruker APEXII CCD diffractometer3778 independent reflections
Radiation source: fine-focus sealed tube3506 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.021
φ and ω scansθmax = 28.3°, θmin = 2.6°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −10→8
Tmin = 0.888, Tmax = 0.988k = −10→10
14199 measured reflectionsl = −17→17
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.033Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.090H atoms treated by a mixture of independent and constrained refinement
S = 1.05w = 1/[σ2(Fo2) + (0.0441P)2 + 0.3414P] where P = (Fo2 + 2Fc2)/3
3778 reflections(Δ/σ)max = 0.002
218 parametersΔρmax = 0.29 e Å3
0 restraintsΔρmin = −0.42 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.29089 (4)−0.28775 (4)1.01726 (2)0.02217 (9)
O60.21891 (13)0.38350 (13)0.79517 (9)0.0345 (2)
O50.27982 (13)0.32749 (13)0.64100 (8)0.0310 (2)
O40.94829 (12)0.02295 (14)0.76530 (8)0.0328 (2)
O30.91096 (14)−0.24191 (14)0.83339 (10)0.0413 (3)
O20.42149 (13)−0.38814 (12)1.09026 (7)0.0293 (2)
O10.13725 (14)−0.20406 (13)1.05726 (8)0.0337 (2)
N10.22714 (17)−0.41143 (15)0.95364 (10)0.0268 (2)
N30.65122 (14)0.20712 (13)0.66209 (8)0.0207 (2)
N40.29355 (13)0.29708 (13)0.73912 (9)0.0221 (2)
N20.85394 (14)−0.09134 (15)0.80100 (8)0.0252 (2)
C10.40261 (16)−0.13002 (15)0.92262 (9)0.0209 (2)
C60.31660 (16)0.03024 (15)0.87675 (9)0.0201 (2)
H60.20120.06210.90210.024*
C50.40260 (15)0.14133 (14)0.79389 (9)0.0189 (2)
C40.57601 (15)0.10563 (14)0.75238 (9)0.0184 (2)
C100.64961 (16)0.39061 (15)0.64526 (10)0.0210 (2)
H10A0.57570.42470.70350.025*
H10B0.59580.45070.57530.025*
C110.83533 (18)0.44270 (17)0.64495 (12)0.0298 (3)
H11A0.88810.38550.71560.036*
H11B0.91040.40620.58800.036*
C120.8312 (2)0.63353 (19)0.62429 (14)0.0386 (3)
H12A0.79000.68980.55140.058*
H12B0.95060.66330.63040.058*
H12C0.75060.67070.67780.058*
C70.74354 (17)0.13316 (16)0.57981 (10)0.0235 (2)
H7A0.73540.00920.60130.028*
H7B0.87040.15240.57510.028*
C80.66410 (19)0.21110 (18)0.46926 (10)0.0298 (3)
H8A0.53350.21320.47720.036*
H8B0.69390.32960.44120.036*
C90.7322 (2)0.1124 (2)0.38841 (12)0.0384 (3)
H9A0.86180.10570.38280.058*
H9B0.68430.17030.31740.058*
H9C0.6943−0.00230.41300.058*
C30.66129 (15)−0.05195 (15)0.81163 (9)0.0207 (2)
C20.57619 (16)−0.16972 (16)0.89134 (10)0.0227 (2)
H20.6365−0.27710.92440.027*
H2N0.312 (3)−0.469 (2)0.9280 (15)0.040 (5)*
H1N0.145 (3)−0.371 (3)0.9149 (16)0.044 (5)*
U11U22U33U12U13U23
S10.02480 (16)0.02270 (15)0.01851 (14)−0.00303 (11)0.00036 (11)−0.00479 (11)
O60.0289 (5)0.0317 (5)0.0472 (6)0.0089 (4)−0.0057 (4)−0.0212 (5)
O50.0278 (5)0.0336 (5)0.0268 (5)0.0022 (4)−0.0057 (4)−0.0013 (4)
O40.0195 (4)0.0433 (6)0.0375 (5)−0.0035 (4)0.0010 (4)−0.0147 (4)
O30.0284 (5)0.0378 (6)0.0472 (6)0.0141 (4)−0.0041 (5)−0.0002 (5)
O20.0337 (5)0.0318 (5)0.0202 (4)−0.0041 (4)−0.0062 (4)−0.0021 (4)
O10.0338 (5)0.0322 (5)0.0332 (5)−0.0025 (4)0.0117 (4)−0.0093 (4)
N10.0269 (6)0.0247 (5)0.0297 (6)−0.0011 (5)−0.0079 (5)−0.0078 (4)
N30.0221 (5)0.0188 (5)0.0212 (5)−0.0008 (4)0.0033 (4)−0.0067 (4)
N40.0164 (5)0.0198 (5)0.0300 (5)−0.0005 (4)−0.0028 (4)−0.0065 (4)
N20.0197 (5)0.0344 (6)0.0208 (5)0.0053 (4)−0.0031 (4)−0.0087 (4)
C10.0230 (6)0.0219 (5)0.0182 (5)−0.0033 (4)−0.0005 (4)−0.0058 (4)
C60.0186 (5)0.0225 (5)0.0213 (5)−0.0017 (4)−0.0008 (4)−0.0095 (4)
C50.0177 (5)0.0185 (5)0.0213 (5)0.0006 (4)−0.0036 (4)−0.0068 (4)
C40.0181 (5)0.0195 (5)0.0190 (5)−0.0011 (4)−0.0022 (4)−0.0075 (4)
C100.0220 (6)0.0183 (5)0.0232 (5)−0.0013 (4)−0.0008 (4)−0.0069 (4)
C110.0233 (6)0.0284 (6)0.0372 (7)−0.0062 (5)−0.0001 (5)−0.0069 (5)
C120.0386 (8)0.0320 (7)0.0487 (9)−0.0143 (6)−0.0012 (7)−0.0127 (6)
C70.0244 (6)0.0233 (6)0.0229 (6)0.0007 (5)0.0038 (4)−0.0090 (5)
C80.0343 (7)0.0312 (7)0.0231 (6)0.0029 (6)0.0011 (5)−0.0088 (5)
C90.0531 (9)0.0376 (8)0.0278 (7)−0.0050 (7)0.0051 (6)−0.0155 (6)
C30.0169 (5)0.0247 (6)0.0204 (5)0.0023 (4)−0.0015 (4)−0.0077 (4)
C20.0238 (6)0.0221 (5)0.0207 (5)0.0023 (5)−0.0034 (4)−0.0046 (4)
S1—O11.4282 (10)C10—C111.5213 (17)
S1—O21.4375 (10)C10—H10A0.9900
S1—N11.6043 (12)C10—H10B0.9900
S1—C11.7675 (12)C11—C121.519 (2)
O6—N41.2199 (14)C11—H11A0.9900
O5—N41.2264 (14)C11—H11B0.9900
O4—N21.2168 (16)C12—H12A0.9800
O3—N21.2330 (15)C12—H12B0.9800
N1—H2N0.86 (2)C12—H12C0.9800
N1—H1N0.81 (2)C7—C81.5248 (18)
N3—C41.3617 (15)C7—H7A0.9900
N3—C71.4648 (14)C7—H7B0.9900
N3—C101.4666 (15)C8—C91.5208 (19)
N4—C51.4741 (15)C8—H8A0.9900
N2—C31.4701 (15)C8—H8B0.9900
C1—C21.3838 (17)C9—H9A0.9800
C1—C61.3961 (17)C9—H9B0.9800
C6—C51.3786 (17)C9—H9C0.9800
C6—H60.9500C3—C21.3826 (17)
C5—C41.4193 (16)C2—H20.9500
C4—C31.4211 (16)
O1—S1—O2120.49 (6)C12—C11—C10110.85 (11)
O1—S1—N1108.20 (7)C12—C11—H11A109.5
O2—S1—N1106.10 (6)C10—C11—H11A109.5
O1—S1—C1107.20 (6)C12—C11—H11B109.5
O2—S1—C1106.46 (6)C10—C11—H11B109.5
N1—S1—C1107.83 (6)H11A—C11—H11B108.1
S1—N1—H2N114.6 (13)C11—C12—H12A109.5
S1—N1—H1N114.7 (14)C11—C12—H12B109.5
H2N—N1—H1N116.7 (19)H12A—C12—H12B109.5
C4—N3—C7120.12 (10)C11—C12—H12C109.5
C4—N3—C10122.12 (10)H12A—C12—H12C109.5
C7—N3—C10117.72 (10)H12B—C12—H12C109.5
O6—N4—O5124.71 (11)N3—C7—C8111.23 (10)
O6—N4—C5117.62 (10)N3—C7—H7A109.4
O5—N4—C5117.63 (10)C8—C7—H7A109.4
O4—N2—O3123.62 (11)N3—C7—H7B109.4
O4—N2—C3119.83 (11)C8—C7—H7B109.4
O3—N2—C3116.50 (11)H7A—C7—H7B108.0
C2—C1—C6120.07 (11)C9—C8—C7111.89 (12)
C2—C1—S1118.82 (9)C9—C8—H8A109.2
C6—C1—S1121.07 (9)C7—C8—H8A109.2
C5—C6—C1118.64 (11)C9—C8—H8B109.2
C5—C6—H6120.7C7—C8—H8B109.2
C1—C6—H6120.7H8A—C8—H8B107.9
C6—C5—C4124.46 (11)C8—C9—H9A109.5
C6—C5—N4115.18 (10)C8—C9—H9B109.5
C4—C5—N4119.93 (10)H9A—C9—H9B109.5
N3—C4—C5123.91 (10)C8—C9—H9C109.5
N3—C4—C3122.89 (10)H9A—C9—H9C109.5
C5—C4—C3113.13 (10)H9B—C9—H9C109.5
N3—C10—C11111.69 (10)C2—C3—C4123.50 (11)
N3—C10—H10A109.3C2—C3—N2114.89 (10)
C11—C10—H10A109.3C4—C3—N2121.19 (11)
N3—C10—H10B109.3C3—C2—C1119.54 (11)
C11—C10—H10B109.3C3—C2—H2120.2
H10A—C10—H10B107.9C1—C2—H2120.2
O1—S1—C1—C2164.43 (10)C6—C5—C4—C3−5.59 (16)
O2—S1—C1—C234.23 (11)N4—C5—C4—C3−177.72 (10)
N1—S1—C1—C2−79.27 (11)C4—N3—C10—C11114.40 (13)
O1—S1—C1—C6−17.88 (12)C7—N3—C10—C11−63.22 (14)
O2—S1—C1—C6−148.07 (10)N3—C10—C11—C12178.41 (11)
N1—S1—C1—C698.42 (11)C4—N3—C7—C8122.80 (12)
C2—C1—C6—C55.48 (17)C10—N3—C7—C8−59.53 (14)
S1—C1—C6—C5−172.19 (9)N3—C7—C8—C9−168.42 (12)
C1—C6—C5—C4−1.23 (17)N3—C4—C3—C2−168.24 (11)
C1—C6—C5—N4171.23 (10)C5—C4—C3—C28.86 (17)
O6—N4—C5—C654.74 (15)N3—C4—C3—N219.50 (17)
O5—N4—C5—C6−122.95 (12)C5—C4—C3—N2−163.40 (10)
O6—N4—C5—C4−132.43 (12)O4—N2—C3—C2−153.30 (11)
O5—N4—C5—C449.88 (15)O3—N2—C3—C224.18 (16)
C7—N3—C4—C5−133.66 (12)O4—N2—C3—C419.59 (17)
C10—N3—C4—C548.78 (16)O3—N2—C3—C4−162.93 (12)
C7—N3—C4—C343.12 (16)C4—C3—C2—C1−5.24 (18)
C10—N3—C4—C3−134.44 (12)N2—C3—C2—C1167.46 (11)
C6—C5—C4—N3171.47 (11)C6—C1—C2—C3−2.40 (18)
N4—C5—C4—N3−0.66 (17)S1—C1—C2—C3175.32 (9)
D—H···AD—HH···AD···AD—H···A
N1—H2N···O6i0.86 (2)2.529 (19)2.9956 (15)114.9 (15)
N1—H2N···O2ii0.86 (2)2.26 (2)3.0839 (16)160.5 (17)
N1—H1N···O3iii0.81 (2)2.15 (2)2.9474 (16)170.0 (19)
C2—H2···N1ii0.952.743.6843 (17)171
C9—H9A···O4iv0.982.693.3192 (18)122
C10—H10A···O2v0.992.593.4033 (15)140
C12—H12C···O3vi0.982.713.249 (2)115
C12—H12A···O5vii0.982.613.492 (2)150
Table 1

Hydrogen-bond geometry (, )

DHA DHHA D A DHA
N1H2NO6i 0.86(2)2.529(19)2.9956(15)114.9(15)
N1H2NO2ii 0.86(2)2.26(2)3.0839(16)160.5(17)
N1H1NO3iii 0.81(2)2.15(2)2.9474(16)170.0(19)
C2H2N1ii 0.952.743.6843(17)171
C9H9AO4iv 0.982.693.3192(18)122
C10H10AO2v 0.992.593.4033(15)140
C12H12CO3vi 0.982.713.249(2)115
C12H12AO5vii 0.982.613.492(2)150

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) ; (vii) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Trifluralin and oryzalin herbicides toxicities to juvenile crawfish (Procambarus clarkii) and mosquitofish (Gambusia affinis).

Authors:  S M Naqvi; T S Leung
Journal:  Bull Environ Contam Toxicol       Date:  1983-09       Impact factor: 2.151

3.  Structures of three substituted arenesulfonamides from X-ray powder diffraction data using the differential evolution technique.

Authors:  Maryjane Tremayne; Colin C Seaton; Christopher Glidewell
Journal:  Acta Crystallogr B       Date:  2002-09-24
  3 in total

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