Literature DB >> 26090202

Crystal structure of 2,2-dimethyl-N-(5-methyl-pyridin-2-yl)propanamide.

Gamal A El-Hiti1, Keith Smith2, Amany S Hegazy2, Saud A Alanazi1, Benson M Kariuki2.   

Abstract

There are two mol-ecules in the asymmetric unit of the title compound, C11H16N2O. The pyridine rings and amide groups overlap almost perfectly (r.m.s. overlay fit = 0.053 Å), but the tertiary butyl groups have different orientations: in one mol-ecule, one of the methyl C atoms is syn to the amide O atom [O-C-C-C = -0.8 (3)°] and in the other the equivalent torsion angle is 31.0 (2)°. In the crystal, the two independent mol-ecules are linked by a pair of N-H⋯N hydrogen bonds in the form of an R 2 (2)(8) loop to form a dimer. A C-H⋯O inter-action connects the dimers into [100] chains.

Entities:  

Keywords:  crystal structure; hydrogen bonding; propanamide

Year:  2015        PMID: 26090202      PMCID: PMC4459364          DOI: 10.1107/S2056989015009378

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For the synthesis and spectroscopic data, see: Turner (1983 ▸). For related compounds, see: El-Hiti et al. (2015a ▸,b ▸); de Candia et al. (2013 ▸); Smith et al. (2013 ▸, 2012 ▸); Abdel-Megeed et al. (2012 ▸); Joule & Mills (2000 ▸). For the crystal structures of related compounds, see: El-Hiti et al. (2014 ▸); Seidler et al. (2011 ▸); Koch et al. (2008 ▸).

Experimental

Crystal data

C11H16N2O M = 192.26 Monoclinic, a = 11.1969 (2) Å b = 8.6439 (2) Å c = 23.8844 (5) Å β = 94.549 (2)° V = 2304.37 (8) Å3 Z = 8 Cu Kα radiation μ = 0.57 mm−1 T = 296 K 0.47 × 0.33 × 0.11 mm

Data collection

Agilent SuperNova (Dual, Cu at zero, Atlas) diffractometer Absorption correction: gaussian (CrysAlis PRO; Agilent, 2014 ▸) T min = 0.925, T max = 0.975 8391 measured reflections 4503 independent reflections 3684 reflections with I > 2σ(I) R int = 0.021

Refinement

R[F 2 > 2σ(F 2)] = 0.047 wR(F 2) = 0.148 S = 1.04 4503 reflections 262 parameters H-atom parameters constrained Δρmax = 0.27 e Å−3 Δρmin = −0.21 e Å−3

Data collection: CrysAlis PRO (Agilent, 2014 ▸); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS2013 (Sheldrick, 2015 ▸); program(s) used to refine structure: SHELXL2013 (Sheldrick, 2015 ▸); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▸); software used to prepare material for publication: WinGX (Farrugia, 2012 ▸). Crystal structure: contains datablock(s) I, New_Global_Publ_Block. DOI: 10.1107/S2056989015009378/hb7430sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015009378/hb7430Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989015009378/hb7430Isup3.cml Click here for additional data file. 11 16 2 . DOI: 10.1107/S2056989015009378/hb7430fig1.tif The asymmetric unit of C11H16N2O with 50% probability displacement ellipsoids for nonhydrogen atoms. Click here for additional data file. . DOI: 10.1107/S2056989015009378/hb7430fig2.tif The asymmetric unit showing N—H⋯N inter­actions as dotted lines. CCDC reference: 1401551 Additional supporting information: crystallographic information; 3D view; checkCIF report
C11H16N2OF(000) = 832
Mr = 192.26Dx = 1.108 Mg m3
Monoclinic, P21/nCu Kα radiation, λ = 1.54184 Å
a = 11.1969 (2) ÅCell parameters from 3890 reflections
b = 8.6439 (2) Åθ = 3.9–73.6°
c = 23.8844 (5) ŵ = 0.57 mm1
β = 94.549 (2)°T = 296 K
V = 2304.37 (8) Å3Plate, colourless
Z = 80.47 × 0.33 × 0.11 mm
Agilent SuperNova (Dual, Cu at zero, Atlas) diffractometer4503 independent reflections
Radiation source: sealed X-ray tube, SuperNova (Cu) X-ray Source3684 reflections with I > 2σ(I)
Mirror monochromatorRint = 0.021
ω scansθmax = 74.0°, θmin = 3.7°
Absorption correction: gaussian (CrysAlis PRO; Agilent, 2014)h = −13→13
Tmin = 0.925, Tmax = 0.975k = −9→10
8391 measured reflectionsl = −29→24
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH-atom parameters constrained
R[F2 > 2σ(F2)] = 0.047w = 1/[σ2(Fo2) + (0.081P)2 + 0.208P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.148(Δ/σ)max < 0.001
S = 1.04Δρmax = 0.27 e Å3
4503 reflectionsΔρmin = −0.21 e Å3
262 parametersExtinction correction: SHELXL2013 (Sheldrick, 2015), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
0 restraintsExtinction coefficient: 0.0075 (6)
Experimental. Absorption correction: CrysAlisPro, Agilent Technologies, Version 1.171.37.33 (release 27-03-2014 CrysAlis171 .NET) (compiled Mar 27 2014,17:12:48) Numerical absorption correction based on gaussian integration over a multifaceted crystal model Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/Ueq
C10.20122 (11)0.54209 (16)0.13526 (5)0.0525 (3)
C20.19343 (14)0.77138 (18)0.08875 (7)0.0650 (4)
H20.14800.85350.07360.097*
C30.31560 (14)0.77581 (19)0.08401 (7)0.0670 (4)
C40.38057 (13)0.6528 (2)0.10739 (7)0.0701 (4)
H40.46320.64990.10550.105*
C50.32450 (12)0.5351 (2)0.13327 (7)0.0654 (4)
H50.36810.45240.14920.098*
C60.3730 (2)0.9087 (3)0.05543 (12)0.1036 (7)
H6A0.45660.91320.06770.155*
H6B0.33491.00370.06490.155*
H6C0.36390.89390.01550.155*
C70.15945 (14)0.27433 (18)0.16115 (6)0.0618 (4)
C80.07563 (15)0.16852 (19)0.19135 (7)0.0689 (4)
C90.1450 (2)0.0226 (2)0.21008 (9)0.0942 (6)
H9A0.1777−0.02430.17820.141*
H9B0.0920−0.04900.22630.141*
H9C0.20900.04960.23750.141*
C100.0273 (2)0.2443 (2)0.24272 (9)0.0918 (6)
H10A−0.01630.16920.26260.138*
H10B−0.02500.32800.23090.138*
H10C0.09290.28320.26700.138*
C11−0.0263 (2)0.1254 (3)0.14762 (12)0.1106 (8)
H11A0.00660.08380.11490.166*
H11B−0.07260.21600.13740.166*
H11C−0.07680.04940.16310.166*
C12−0.12246 (11)0.71207 (16)0.19991 (6)0.0520 (3)
C13−0.02137 (14)0.65237 (19)0.28397 (6)0.0650 (4)
H130.04090.59950.30370.098*
C14−0.09434 (14)0.74294 (19)0.31429 (6)0.0634 (4)
C15−0.18413 (15)0.8222 (2)0.28376 (7)0.0710 (4)
H15−0.23500.88610.30230.106*
C16−0.19970 (14)0.8082 (2)0.22610 (7)0.0660 (4)
H16−0.26030.86180.20540.099*
C17−0.0774 (2)0.7526 (3)0.37741 (7)0.0909 (6)
H17A−0.09970.85380.38940.136*
H17B0.00510.73350.38950.136*
H17C−0.12680.67650.39360.136*
C18−0.22818 (13)0.6925 (2)0.10586 (6)0.0671 (4)
C19−0.21118 (14)0.6626 (2)0.04398 (6)0.0714 (4)
C20−0.1518 (2)0.5048 (3)0.03776 (9)0.1036 (7)
H20A−0.07360.50540.05750.155*
H20B−0.14450.4838−0.00130.155*
H20C−0.19990.42600.05320.155*
C21−0.1325 (2)0.7892 (3)0.02172 (9)0.1074 (8)
H21A−0.16590.88870.02930.161*
H21B−0.12910.7767−0.01810.161*
H21C−0.05320.78190.04000.161*
C22−0.33408 (17)0.6641 (3)0.01113 (8)0.0955 (7)
H22A−0.38100.57900.02300.143*
H22B−0.32420.6546−0.02830.143*
H22C−0.37420.75960.01800.143*
N10.13561 (10)0.65829 (14)0.11338 (5)0.0578 (3)
N20.13689 (10)0.42840 (14)0.16285 (5)0.0577 (3)
H2A0.07950.45890.18210.086*
N3−0.03374 (10)0.63507 (14)0.22795 (5)0.0589 (3)
N4−0.12739 (10)0.69100 (15)0.14133 (5)0.0585 (3)
H4A−0.06060.67580.12670.088*
O10.23876 (14)0.22212 (15)0.13479 (7)0.0942 (4)
O2−0.32545 (10)0.7145 (3)0.12290 (6)0.1234 (7)
U11U22U33U12U13U23
C10.0471 (6)0.0604 (7)0.0506 (6)−0.0005 (5)0.0069 (5)−0.0061 (5)
C20.0609 (8)0.0606 (8)0.0750 (9)0.0020 (6)0.0152 (7)0.0019 (7)
C30.0619 (8)0.0670 (9)0.0739 (9)−0.0103 (7)0.0180 (7)−0.0082 (7)
C40.0458 (7)0.0872 (11)0.0783 (10)−0.0058 (7)0.0111 (6)−0.0054 (8)
C50.0476 (7)0.0792 (10)0.0695 (9)0.0046 (7)0.0061 (6)0.0024 (7)
C60.0929 (14)0.0845 (13)0.139 (2)−0.0182 (11)0.0419 (13)0.0105 (12)
C70.0633 (8)0.0634 (8)0.0595 (8)0.0033 (7)0.0093 (6)−0.0058 (6)
C80.0743 (10)0.0600 (8)0.0730 (9)−0.0017 (7)0.0096 (8)0.0039 (7)
C90.1260 (17)0.0716 (11)0.0864 (12)0.0159 (11)0.0172 (12)0.0096 (9)
C100.1089 (15)0.0753 (11)0.0977 (13)0.0020 (10)0.0486 (12)0.0135 (10)
C110.0982 (15)0.1086 (17)0.1210 (18)−0.0325 (13)−0.0168 (14)0.0207 (14)
C120.0441 (6)0.0584 (7)0.0541 (7)−0.0037 (5)0.0082 (5)−0.0028 (5)
C130.0649 (8)0.0748 (9)0.0553 (8)0.0084 (7)0.0041 (6)0.0003 (7)
C140.0628 (8)0.0718 (9)0.0566 (8)−0.0045 (7)0.0101 (6)−0.0074 (6)
C150.0643 (9)0.0830 (10)0.0672 (9)0.0103 (8)0.0145 (7)−0.0160 (8)
C160.0574 (8)0.0769 (9)0.0643 (8)0.0125 (7)0.0078 (6)−0.0056 (7)
C170.0947 (13)0.1195 (16)0.0590 (9)0.0039 (12)0.0092 (9)−0.0124 (10)
C180.0479 (7)0.0957 (11)0.0581 (8)−0.0060 (7)0.0062 (6)−0.0059 (7)
C190.0574 (8)0.1030 (12)0.0540 (8)−0.0056 (8)0.0058 (6)−0.0037 (8)
C200.1021 (15)0.1323 (18)0.0765 (12)0.0172 (14)0.0078 (10)−0.0312 (12)
C210.0894 (13)0.161 (2)0.0718 (11)−0.0318 (14)0.0046 (10)0.0262 (13)
C220.0681 (10)0.153 (2)0.0636 (10)−0.0080 (12)−0.0058 (8)−0.0082 (11)
N10.0483 (6)0.0612 (6)0.0649 (7)0.0024 (5)0.0111 (5)−0.0014 (5)
N20.0517 (6)0.0616 (7)0.0612 (6)0.0020 (5)0.0141 (5)0.0003 (5)
N30.0564 (6)0.0654 (7)0.0555 (6)0.0082 (5)0.0078 (5)−0.0030 (5)
N40.0464 (6)0.0772 (8)0.0526 (6)0.0019 (5)0.0081 (5)−0.0045 (5)
O10.1027 (10)0.0738 (8)0.1127 (10)0.0100 (7)0.0496 (8)−0.0114 (7)
O20.0451 (6)0.250 (2)0.0754 (8)−0.0005 (9)0.0067 (5)−0.0370 (11)
C1—N11.3269 (18)C12—C161.384 (2)
C1—C51.3862 (19)C12—N41.4077 (17)
C1—N21.4122 (17)C13—N31.3427 (19)
C2—N11.3346 (19)C13—C141.378 (2)
C2—C31.382 (2)C13—H130.9300
C2—H20.9300C14—C151.377 (2)
C3—C41.381 (2)C14—C171.507 (2)
C3—C61.506 (2)C15—C161.380 (2)
C4—C51.368 (2)C15—H150.9300
C4—H40.9300C16—H160.9300
C5—H50.9300C17—H17A0.9600
C6—H6A0.9600C17—H17B0.9600
C6—H6B0.9600C17—H17C0.9600
C6—H6C0.9600C18—O21.208 (2)
C7—O11.2155 (19)C18—N41.3565 (19)
C7—N21.3567 (19)C18—C191.527 (2)
C7—C81.531 (2)C19—C211.526 (3)
C8—C101.527 (3)C19—C221.529 (2)
C8—C91.529 (3)C19—C201.531 (3)
C8—C111.531 (3)C20—H20A0.9600
C9—H9A0.9600C20—H20B0.9600
C9—H9B0.9600C20—H20C0.9600
C9—H9C0.9600C21—H21A0.9600
C10—H10A0.9600C21—H21B0.9600
C10—H10B0.9600C21—H21C0.9600
C10—H10C0.9600C22—H22A0.9600
C11—H11A0.9600C22—H22B0.9600
C11—H11B0.9600C22—H22C0.9600
C11—H11C0.9600N2—H2A0.8600
C12—N31.3314 (18)N4—H4A0.8600
N1—C1—C5122.76 (13)N3—C13—H13117.7
N1—C1—N2115.06 (11)C14—C13—H13117.7
C5—C1—N2122.13 (13)C15—C14—C13116.30 (14)
N1—C2—C3125.05 (15)C15—C14—C17122.08 (15)
N1—C2—H2117.5C13—C14—C17121.62 (16)
C3—C2—H2117.5C14—C15—C16120.94 (14)
C4—C3—C2116.01 (14)C14—C15—H15119.5
C4—C3—C6122.73 (16)C16—C15—H15119.5
C2—C3—C6121.25 (17)C15—C16—C12118.01 (14)
C5—C4—C3120.60 (14)C15—C16—H16121.0
C5—C4—H4119.7C12—C16—H16121.0
C3—C4—H4119.7C14—C17—H17A109.5
C4—C5—C1118.49 (15)C14—C17—H17B109.5
C4—C5—H5120.8H17A—C17—H17B109.5
C1—C5—H5120.8C14—C17—H17C109.5
C3—C6—H6A109.5H17A—C17—H17C109.5
C3—C6—H6B109.5H17B—C17—H17C109.5
H6A—C6—H6B109.5O2—C18—N4121.25 (14)
C3—C6—H6C109.5O2—C18—C19122.54 (14)
H6A—C6—H6C109.5N4—C18—C19116.20 (13)
H6B—C6—H6C109.5C21—C19—C18109.61 (16)
O1—C7—N2121.70 (15)C21—C19—C22109.63 (17)
O1—C7—C8121.50 (15)C18—C19—C22108.60 (14)
N2—C7—C8116.72 (13)C21—C19—C20109.78 (18)
C10—C8—C9108.82 (16)C18—C19—C20109.45 (16)
C10—C8—C11111.11 (19)C22—C19—C20109.75 (18)
C9—C8—C11109.45 (17)C19—C20—H20A109.5
C10—C8—C7113.06 (14)C19—C20—H20B109.5
C9—C8—C7108.31 (15)H20A—C20—H20B109.5
C11—C8—C7106.00 (15)C19—C20—H20C109.5
C8—C9—H9A109.5H20A—C20—H20C109.5
C8—C9—H9B109.5H20B—C20—H20C109.5
H9A—C9—H9B109.5C19—C21—H21A109.5
C8—C9—H9C109.5C19—C21—H21B109.5
H9A—C9—H9C109.5H21A—C21—H21B109.5
H9B—C9—H9C109.5C19—C21—H21C109.5
C8—C10—H10A109.5H21A—C21—H21C109.5
C8—C10—H10B109.5H21B—C21—H21C109.5
H10A—C10—H10B109.5C19—C22—H22A109.5
C8—C10—H10C109.5C19—C22—H22B109.5
H10A—C10—H10C109.5H22A—C22—H22B109.5
H10B—C10—H10C109.5C19—C22—H22C109.5
C8—C11—H11A109.5H22A—C22—H22C109.5
C8—C11—H11B109.5H22B—C22—H22C109.5
H11A—C11—H11B109.5C1—N1—C2117.08 (12)
C8—C11—H11C109.5C7—N2—C1124.47 (12)
H11A—C11—H11C109.5C7—N2—H2A117.8
H11B—C11—H11C109.5C1—N2—H2A117.8
N3—C12—C16122.75 (13)C12—N3—C13117.35 (12)
N3—C12—N4113.83 (11)C18—N4—C12125.79 (12)
C16—C12—N4123.38 (13)C18—N4—H4A117.1
N3—C13—C14124.64 (14)C12—N4—H4A117.1
N1—C2—C3—C4−0.6 (3)O2—C18—C19—C21119.0 (2)
N1—C2—C3—C6−179.97 (18)N4—C18—C19—C21−61.9 (2)
C2—C3—C4—C50.2 (2)O2—C18—C19—C22−0.8 (3)
C6—C3—C4—C5179.56 (18)N4—C18—C19—C22178.35 (18)
C3—C4—C5—C10.3 (2)O2—C18—C19—C20−120.6 (2)
N1—C1—C5—C4−0.3 (2)N4—C18—C19—C2058.5 (2)
N2—C1—C5—C4−177.72 (14)C5—C1—N1—C20.0 (2)
O1—C7—C8—C10151.67 (19)N2—C1—N1—C2177.54 (12)
N2—C7—C8—C10−31.6 (2)C3—C2—N1—C10.5 (2)
O1—C7—C8—C931.0 (2)O1—C7—N2—C1−0.2 (2)
N2—C7—C8—C9−152.30 (15)C8—C7—N2—C1−176.94 (13)
O1—C7—C8—C11−86.4 (2)N1—C1—N2—C7142.20 (14)
N2—C7—C8—C1190.33 (19)C5—C1—N2—C7−40.2 (2)
N3—C13—C14—C15−1.3 (3)C16—C12—N3—C130.6 (2)
N3—C13—C14—C17177.95 (17)N4—C12—N3—C13178.41 (13)
C13—C14—C15—C160.9 (3)C14—C13—N3—C120.5 (2)
C17—C14—C15—C16−178.27 (18)O2—C18—N4—C120.7 (3)
C14—C15—C16—C120.1 (3)C19—C18—N4—C12−178.44 (15)
N3—C12—C16—C15−0.9 (2)N3—C12—N4—C18148.58 (15)
N4—C12—C16—C15−178.46 (15)C16—C12—N4—C18−33.7 (2)
D—H···AD—HH···AD···AD—H···A
N2—H2A···N30.862.313.1192 (16)156
N4—H4A···N10.862.253.0837 (16)163
C4—H4···O2i0.932.433.3262 (19)160
Table 1

Hydrogen-bond geometry (, )

DHA DHHA D A DHA
N2H2AN30.862.313.1192(16)156
N4H4AN10.862.253.0837(16)163
C4H4O2i 0.932.433.3262(19)160

Symmetry code: (i) .

  6 in total

1.  Synthesis, antimicrobial and anticancer activities of a novel series of diphenyl 1-(pyridin-3-yl)ethylphosphonates.

Authors:  Mohamed F Abdel-Megeed; Badr E Badr; Mohamed M Azaam; Gamal A El-Hiti
Journal:  Bioorg Med Chem       Date:  2012-02-13       Impact factor: 3.641

2.  tert-Butyl N-(4-methyl-2-pyrid-yl)-carbamate.

Authors:  Pierre Koch; Dieter Schollmeyer; Stefan Laufer
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-10-31

3.  Synthesis and biological evaluation of direct thrombin inhibitors bearing 4-(piperidin-1-yl)pyridine at the P1 position with potent anticoagulant activity.

Authors:  Modesto de Candia; Filomena Fiorella; Gianfranco Lopopolo; Andrea Carotti; Maria Rosaria Romano; Marcello Diego Lograno; Sophie Martel; Pierre-Alain Carrupt; Benny D Belviso; Rocco Caliandro; Cosimo Altomare
Journal:  J Med Chem       Date:  2013-10-22       Impact factor: 7.446

4.  N-(5-Nitro-pyridin-2-yl)-5H-dibenzo[d,f][1,3]diazepine-6-carboxamide.

Authors:  Tomasz Seidler; Marlena Gryl; Bartosz Trzewik; Katarzyna Stadnicka
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-05-25

5.  2,2-Dimethyl-N-(4-methyl-pyridin-2-yl)propanamide.

Authors:  Gamal A El-Hiti; Keith Smith; Asim A Balakit; Amany S Hegazy; Benson M Kariuki
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-02-26

6.  Crystal structure refinement with SHELXL.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr C Struct Chem       Date:  2015-01-01       Impact factor: 1.172

  6 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.