Literature DB >> 26090200

Crystal structure of 4-amino-3-(3-methyl-5-phenyl-1H-pyrazol-1-yl)-1H-1,2,4-triazole-5(4H)-thione.

Joel T Mague1, Shaaban K Mohamed2, Mehmet Akkurt3, Mustafa R Albayati4.   

Abstract

In the title compound, C12H12N6S, the dihedral angles between the central pyrazole ring and the pendant triazole and benzene rings are 68.01 (4) and 59.83 (9)°, respectively. In the crystal, mol-ecules are linked by N-H⋯N and N-H⋯S hydrogen bonds, generating (10-1) sheets.

Entities:  

Keywords:  amino­triazoles; crystal structure; hydrogen bonding

Year:  2015        PMID: 26090200      PMCID: PMC4459321          DOI: 10.1107/S205698901500938X

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For the bio-activities of amino­triazoles, see: Jin et al. (2007 ▸); Joung et al. (2000 ▸). For amino­triazoles as block-building synthons, see: Curtis (2004 ▸).

Experimental

Crystal data

C12H12N6S M = 272.34 Monoclinic, a = 11.3278 (4) Å b = 8.3970 (3) Å c = 15.4427 (5) Å β = 109.053 (1)° V = 1388.43 (8) Å3 Z = 4 Cu Kα radiation μ = 2.04 mm−1 T = 150 K 0.24 × 0.18 × 0.10 mm

Data collection

Bruker D8 VENTURE PHOTON 100 CMOS diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2014 ▸) T min = 0.77, T max = 0.82 10355 measured reflections 2683 independent reflections 2515 reflections with I > 2σ(I) R int = 0.021

Refinement

R[F 2 > 2σ(F 2)] = 0.036 wR(F 2) = 0.102 S = 1.09 2683 reflections 173 parameters H-atom parameters constrained Δρmax = 0.36 e Å−3 Δρmin = −0.28 e Å−3

Data collection: APEX2 (Bruker, 2014 ▸); cell refinement: SAINT (Bruker, 2014 ▸); data reduction: SAINT; program(s) used to solve structure: SHELXT (Sheldrick, 2015a ▸); program(s) used to refine structure: SHELXL2014 (Sheldrick, 2015b ▸); molecular graphics: DIAMOND (Brandenburg & Putz, 2012 ▸); software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▸). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S205698901500938X/hb7427sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S205698901500938X/hb7427Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S205698901500938X/hb7427Isup3.cml Click here for additional data file. . DOI: 10.1107/S205698901500938X/hb7427fig1.tif The title mol­ecule showing labeling scheme and 50% probability ellipsoids. Click here for additional data file. b . DOI: 10.1107/S205698901500938X/hb7427fig2.tif Packing viewed down the b axis. N—H⋯N and N—H⋯S hydrogen bonds are shown, respectively, as blue and purple dotted lines. CCDC reference: 1401505 Additional supporting information: crystallographic information; 3D view; checkCIF report
C12H12N6SF(000) = 568
Mr = 272.34Dx = 1.303 Mg m3
Monoclinic, P21/nCu Kα radiation, λ = 1.54178 Å
a = 11.3278 (4) ÅCell parameters from 8668 reflections
b = 8.3970 (3) Åθ = 4.3–72.3°
c = 15.4427 (5) ŵ = 2.04 mm1
β = 109.053 (1)°T = 150 K
V = 1388.43 (8) Å3Block, colourless
Z = 40.24 × 0.18 × 0.10 mm
Bruker D8 VENTURE PHOTON 100 CMOS diffractometer2683 independent reflections
Radiation source: INCOATEC IµS micro-focus source2515 reflections with I > 2σ(I)
Mirror monochromatorRint = 0.021
Detector resolution: 10.4167 pixels mm-1θmax = 72.3°, θmin = 4.2°
ω scansh = −13→13
Absorption correction: multi-scan (SADABS; Bruker, 2014)k = −9→10
Tmin = 0.77, Tmax = 0.82l = −19→19
10355 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.036Hydrogen site location: mixed
wR(F2) = 0.102H-atom parameters constrained
S = 1.09w = 1/[σ2(Fo2) + (0.0581P)2 + 0.5187P] where P = (Fo2 + 2Fc2)/3
2683 reflections(Δ/σ)max = 0.002
173 parametersΔρmax = 0.36 e Å3
0 restraintsΔρmin = −0.28 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes)are estimated using the full covariance matrix. The cell e.s.d.'s are takeninto account individually in the estimation of e.s.d.'s in distances, anglesand torsion angles; correlations between e.s.d.'s in cell parameters are onlyused when they are defined by crystal symmetry. An approximate (isotropic)treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR andgoodness of fit S are based on F2, conventional R-factors R are basedon F, with F set to zero for negative F2. The threshold expression ofF2 > σ(F2) is used only for calculating R-factors(gt) etc. and isnot relevant to the choice of reflections for refinement. R-factors basedon F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger. H-atoms attached to carbonwere placed in calculated positions (C—H = 0.95 - 0.98 Å) while thoseattached to nitrogen were placed in locations derived from a differencemap and their parameters adjusted to give N—H = 0.91 Å. All wereincluded as riding contributions with isotropic displacementparameters 1.2 - 1.5 times those of the attached atoms.
xyzUiso*/Ueq
S11.06212 (3)0.49379 (4)0.36297 (2)0.02864 (14)
N10.52909 (11)0.54447 (14)0.29113 (8)0.0249 (3)
N20.60148 (11)0.41615 (13)0.33081 (8)0.0235 (3)
N30.86566 (11)0.29657 (15)0.28254 (8)0.0263 (3)
H3A0.90390.22560.25590.032*
N40.74091 (11)0.27516 (15)0.27154 (9)0.0273 (3)
N50.81912 (11)0.48358 (13)0.35855 (8)0.0205 (3)
N60.81859 (11)0.61690 (14)0.41236 (8)0.0262 (3)
H6A0.87040.59480.46990.031*
H6B0.85120.69730.38780.031*
C10.60875 (14)0.17810 (17)0.42641 (9)0.0251 (3)
C20.72215 (17)0.1972 (2)0.49645 (11)0.0399 (4)
H20.75590.30090.51200.048*
C30.78631 (19)0.0666 (2)0.54370 (13)0.0469 (5)
H30.86360.08070.59140.056*
C40.73738 (18)−0.0845 (2)0.52122 (12)0.0392 (4)
H40.7808−0.17440.55380.047*
C50.62567 (16)−0.10472 (18)0.45161 (11)0.0344 (4)
H50.5927−0.20880.43620.041*
C60.56078 (15)0.02533 (18)0.40384 (11)0.0292 (3)
H60.48390.01020.35590.035*
C70.54349 (13)0.31865 (17)0.37531 (9)0.0239 (3)
C80.43020 (14)0.38690 (19)0.36366 (10)0.0287 (3)
H80.36700.34820.38620.034*
C90.42509 (14)0.52643 (18)0.31143 (10)0.0262 (3)
C100.71675 (13)0.39120 (16)0.31857 (9)0.0218 (3)
C110.91672 (13)0.42285 (16)0.33429 (9)0.0222 (3)
C120.32313 (15)0.6470 (2)0.28071 (13)0.0386 (4)
H12A0.34810.73160.24660.058*
H12B0.30740.69280.33430.058*
H12C0.24690.59570.24110.058*
U11U22U33U12U13U23
S10.0210 (2)0.0357 (2)0.0290 (2)−0.00344 (13)0.00779 (15)−0.00294 (13)
N10.0233 (6)0.0232 (6)0.0304 (6)0.0020 (5)0.0120 (5)0.0040 (5)
N20.0235 (6)0.0206 (6)0.0301 (6)0.0012 (4)0.0136 (5)0.0031 (4)
N30.0235 (6)0.0263 (6)0.0330 (6)−0.0013 (5)0.0145 (5)−0.0075 (5)
N40.0242 (6)0.0270 (6)0.0340 (6)−0.0030 (5)0.0141 (5)−0.0049 (5)
N50.0224 (6)0.0193 (5)0.0210 (5)0.0013 (4)0.0088 (5)−0.0009 (4)
N60.0311 (7)0.0225 (6)0.0248 (6)0.0018 (5)0.0089 (5)−0.0048 (4)
C10.0288 (7)0.0241 (7)0.0251 (7)−0.0021 (5)0.0125 (6)0.0010 (5)
C20.0459 (10)0.0302 (8)0.0355 (8)−0.0082 (7)0.0019 (7)0.0026 (6)
C30.0468 (11)0.0443 (10)0.0382 (9)−0.0008 (8)−0.0018 (8)0.0085 (8)
C40.0500 (10)0.0327 (9)0.0369 (8)0.0094 (7)0.0168 (7)0.0099 (6)
C50.0477 (10)0.0223 (7)0.0372 (8)0.0004 (6)0.0195 (7)−0.0018 (6)
C60.0316 (8)0.0262 (7)0.0313 (8)−0.0027 (6)0.0122 (6)−0.0033 (6)
C70.0258 (7)0.0230 (7)0.0242 (6)−0.0061 (5)0.0101 (5)−0.0012 (5)
C80.0246 (7)0.0313 (8)0.0333 (7)−0.0045 (6)0.0136 (6)0.0045 (6)
C90.0223 (7)0.0283 (7)0.0294 (7)−0.0019 (5)0.0104 (6)0.0014 (6)
C100.0217 (7)0.0208 (6)0.0242 (6)0.0001 (5)0.0094 (5)0.0018 (5)
C110.0244 (7)0.0229 (7)0.0207 (6)0.0014 (5)0.0091 (5)0.0014 (5)
C120.0262 (8)0.0422 (9)0.0521 (10)0.0079 (7)0.0193 (7)0.0143 (8)
S1—C111.6697 (14)C2—C31.384 (2)
N1—C91.3230 (19)C2—H20.9500
N1—N21.3714 (16)C3—C41.383 (3)
N2—C71.3670 (18)C3—H30.9500
N2—C101.3949 (18)C4—C51.377 (3)
N3—C111.3401 (18)C4—H40.9500
N3—N41.3790 (17)C5—C61.387 (2)
N3—H3A0.9100C5—H50.9500
N4—C101.2968 (18)C6—H60.9500
N5—C101.3639 (18)C7—C81.363 (2)
N5—C111.3759 (17)C8—C91.413 (2)
N5—N61.3953 (15)C8—H80.9500
N6—H6A0.9101C9—C121.492 (2)
N6—H6B0.9099C12—H12A0.9800
C1—C21.392 (2)C12—H12B0.9800
C1—C61.392 (2)C12—H12C0.9800
C1—C71.477 (2)
C9—N1—N2104.65 (11)C4—C5—H5119.6
C7—N2—N1112.32 (11)C6—C5—H5119.6
C7—N2—C10127.07 (12)C5—C6—C1119.77 (15)
N1—N2—C10120.47 (11)C5—C6—H6120.1
C11—N3—N4113.70 (11)C1—C6—H6120.1
C11—N3—H3A127.7C8—C7—N2105.56 (12)
N4—N3—H3A118.6C8—C7—C1133.80 (13)
C10—N4—N3103.20 (11)N2—C7—C1120.55 (12)
C10—N5—C11107.82 (11)C7—C8—C9106.58 (12)
C10—N5—N6123.89 (11)C7—C8—H8126.7
C11—N5—N6128.28 (12)C9—C8—H8126.7
N5—N6—H6A107.0N1—C9—C8110.89 (13)
N5—N6—H6B105.4N1—C9—C12120.25 (13)
H6A—N6—H6B109.8C8—C9—C12128.85 (14)
C2—C1—C6119.08 (14)N4—C10—N5112.16 (12)
C2—C1—C7119.82 (13)N4—C10—N2124.53 (13)
C6—C1—C7121.07 (13)N5—C10—N2123.26 (12)
C3—C2—C1120.73 (16)N3—C11—N5103.12 (11)
C3—C2—H2119.6N3—C11—S1129.55 (11)
C1—C2—H2119.6N5—C11—S1127.32 (11)
C4—C3—C2119.73 (16)C9—C12—H12A109.5
C4—C3—H3120.1C9—C12—H12B109.5
C2—C3—H3120.1H12A—C12—H12B109.5
C5—C4—C3119.98 (16)C9—C12—H12C109.5
C5—C4—H4120.0H12A—C12—H12C109.5
C3—C4—H4120.0H12B—C12—H12C109.5
C4—C5—C6120.70 (15)
C9—N1—N2—C70.12 (16)N2—N1—C9—C8−0.21 (16)
C9—N1—N2—C10176.19 (12)N2—N1—C9—C12178.88 (14)
C11—N3—N4—C10−0.45 (16)C7—C8—C9—N10.23 (18)
C6—C1—C2—C3−0.5 (3)C7—C8—C9—C12−178.76 (16)
C7—C1—C2—C3−178.43 (16)N3—N4—C10—N5−0.20 (15)
C1—C2—C3—C40.0 (3)N3—N4—C10—N2−177.56 (12)
C2—C3—C4—C50.5 (3)C11—N5—C10—N40.75 (15)
C3—C4—C5—C6−0.4 (3)N6—N5—C10—N4179.53 (12)
C4—C5—C6—C1−0.1 (2)C11—N5—C10—N2178.15 (12)
C2—C1—C6—C50.5 (2)N6—N5—C10—N2−3.1 (2)
C7—C1—C6—C5178.45 (13)C7—N2—C10—N464.2 (2)
N1—N2—C7—C80.02 (16)N1—N2—C10—N4−111.26 (16)
C10—N2—C7—C8−175.74 (13)C7—N2—C10—N5−112.89 (16)
N1—N2—C7—C1−176.94 (12)N1—N2—C10—N571.66 (18)
C10—N2—C7—C17.3 (2)N4—N3—C11—N50.88 (15)
C2—C1—C7—C8−118.65 (19)N4—N3—C11—S1−178.60 (11)
C6—C1—C7—C863.4 (2)C10—N5—C11—N3−0.94 (14)
C2—C1—C7—N257.3 (2)N6—N5—C11—N3−179.65 (12)
C6—C1—C7—N2−120.64 (15)C10—N5—C11—S1178.55 (10)
N2—C7—C8—C9−0.14 (16)N6—N5—C11—S1−0.2 (2)
C1—C7—C8—C9176.23 (15)
D—H···AD—HH···AD···AD—H···A
N3—H3A···N1i0.911.942.8429 (17)169
N6—H6A···S1ii0.912.553.4157 (13)159
N6—H6B···N4iii0.912.433.0059 (18)122
Table 1

Hydrogen-bond geometry (, )

DHA DHHA D A DHA
N3H3AN1i 0.911.942.8429(17)169
N6H6AS1ii 0.912.553.4157(13)159
N6H6BN4iii 0.912.433.0059(18)122

Symmetry codes: (i) ; (ii) ; (iii) .

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