Literature DB >> 26090192

Crystal structure of 4-amino-2,6-di-chloro-phenol.

Kyle J McDonald1, Vasumathi Desikan1, James A Golen2, David R Manke2.   

Abstract

The title compound, C6H5Cl2NO, has a single planar mol-ecule in the asymmetric unit with the non-H atoms possessing a mean deviation from planarity of 0.020 Å. In the crystal, O-H⋯N hydrogen bonds lead to the formation of infinite chains along [101] which are further linked by N-H⋯O hydrogen bonds, forming (010) sheets.

Entities:  

Keywords:  amino­phenols; crystal structure; hydrogen bonding

Year:  2015        PMID: 26090192      PMCID: PMC4459336          DOI: 10.1107/S2056989015009172

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For the crystal structure of the parent p-amino­phenol, see: Brown (1951 ▸). For other related structures, see: Ermer & Eling (1994 ▸); Dey et al. (2005 ▸); Bacchi et al. (2009 ▸).

Experimental

Crystal data

C6H5Cl2NO M = 178.02 Monoclinic, a = 4.6064 (5) Å b = 11.7569 (12) Å c = 13.2291 (13) Å β = 96.760 (5)° V = 711.47 (13) Å3 Z = 4 Cu Kα radiation μ = 7.59 mm−1 T = 120 K 0.4 × 0.2 × 0.1 mm

Data collection

Bruker D8 Venture CMOS diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2014 ▸) T min = 0.425, T max = 0.754 7481 measured reflections 1402 independent reflections 1273 reflections with I ≥ 2σ(I) R int = 0.043

Refinement

R[F 2 > 2σ(F 2)] = 0.033 wR(F 2) = 0.091 S = 1.05 1402 reflections 99 parameters 2 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.33 e Å−3 Δρmin = −0.35 e Å−3

Data collection: APEX2 (Bruker, 2014 ▸); cell refinement: SAINT (Bruker, 2014 ▸); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▸); program(s) used to refine structure: SHELXL2014 (Sheldrick, 2015 ▸) and OLEX2.refine (Bourhis et al., 2015 ▸); molecular graphics: OLEX2 (Dolomanov et al., 2009 ▸); software used to prepare material for publication: OLEX2 and publCIF (Westrip, 2010 ▸). Crystal structure: contains datablock(s) I. DOI: 10.1107/S2056989015009172/ff2137sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015009172/ff2137Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989015009172/ff2137Isup3.cml Click here for additional data file. . DOI: 10.1107/S2056989015009172/ff2137fig1.tif Mol­ecular structure of the title compound, showing the atom-labelling scheme. Displacement ellipsoids are drawn at the 50% probability level. H atoms are drawn as spheres of arbitrary radius. Click here for additional data file. . DOI: 10.1107/S2056989015009172/ff2137fig2.tif Mol­ecular packing of the title compound with hydrogen bonding shown as dashed lines. CCDC reference: 1400729 Additional supporting information: crystallographic information; 3D view; checkCIF report
C6H5Cl2NOF(000) = 363.7579
Mr = 178.02Dx = 1.662 Mg m3
Monoclinic, P21/nCu Kα radiation, λ = 1.54178 Å
Hall symbol: -P 2ynCell parameters from 5198 reflections
a = 4.6064 (5) Åθ = 5.1–72.2°
b = 11.7569 (12) ŵ = 7.59 mm1
c = 13.2291 (13) ÅT = 120 K
β = 96.760 (5)°Plate, colourless
V = 711.47 (13) Å30.4 × 0.2 × 0.1 mm
Z = 4
Bruker D8 Venture CMOS diffractometer1402 independent reflections
Radiation source: microfocus Cu1273 reflections with I≥ 2σ(I)
HELIOS MX monochromatorRint = 0.043
Detector resolution: 102.4 pixels mm-1θmax = 72.2°, θmin = 5.1°
φ and ω scansh = −5→5
Absorption correction: multi-scan (SADABS; Bruker, 2014)k = −14→14
Tmin = 0.425, Tmax = 0.754l = −12→16
7481 measured reflections
Refinement on F22 restraints
Least-squares matrix: full7 constraints
R[F2 > 2σ(F2)] = 0.033H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.091w = 1/[σ2(Fo2) + (0.0618P)2 + 0.1912P] where P = (Fo2 + 2Fc2)/3
S = 1.05(Δ/σ)max < 0.001
1402 reflectionsΔρmax = 0.33 e Å3
99 parametersΔρmin = −0.35 e Å3
Experimental. Absorption correction: SADABS-2014/4 (Bruker, 2014) was used for absorption correction. wR2(int) was 0.1370 before and 0.0641 after correction. The Ratio of minimum to maximum transmission is 0.5642. The λ/2 correction factor is 0.00150.
xyzUiso*/Ueq
Cl10.10618 (10)0.09750 (4)0.70434 (3)0.02213 (17)
Cl20.79187 (11)0.44532 (4)0.61176 (4)0.02666 (18)
O10.4519 (3)0.30303 (12)0.74687 (10)0.0214 (3)
N10.4522 (4)0.13356 (14)0.35171 (12)0.0199 (4)
C10.4563 (4)0.26523 (16)0.65055 (14)0.0176 (4)
C40.4607 (4)0.17796 (16)0.45234 (13)0.0176 (4)
C50.6112 (4)0.27756 (16)0.48060 (14)0.0196 (4)
H50.7170 (4)0.31620 (16)0.43359 (14)0.0235 (5)*
C20.3011 (4)0.16753 (16)0.61822 (14)0.0171 (4)
C30.3014 (4)0.12337 (16)0.52110 (14)0.0182 (4)
H30.1938 (4)0.05638 (16)0.50165 (14)0.0219 (5)*
C60.6052 (4)0.31990 (16)0.57788 (14)0.0179 (4)
H10.615 (5)0.329 (2)0.7732 (18)0.0215 (5)*
H1a0.601 (3)0.1551 (19)0.3217 (15)0.0215 (5)*
H1b0.451 (5)0.0598 (4)0.3523 (17)0.0215 (5)*
U11U22U33U12U13U23
Cl10.0232 (3)0.0246 (3)0.0204 (3)−0.00409 (16)0.00988 (19)0.00083 (17)
Cl20.0334 (3)0.0245 (3)0.0225 (3)−0.01014 (19)0.0052 (2)−0.00026 (18)
O10.0193 (6)0.0298 (7)0.0156 (7)−0.0039 (6)0.0046 (5)−0.0042 (6)
N10.0206 (8)0.0247 (9)0.0151 (8)0.0013 (6)0.0057 (6)−0.0009 (6)
C10.0146 (8)0.0225 (9)0.0159 (9)0.0027 (7)0.0023 (7)0.0008 (7)
C40.0138 (8)0.0248 (9)0.0142 (9)0.0050 (7)0.0009 (7)0.0005 (7)
C50.0177 (9)0.0244 (10)0.0173 (9)0.0005 (7)0.0048 (7)0.0054 (7)
C20.0144 (8)0.0215 (9)0.0163 (9)0.0011 (7)0.0051 (7)0.0035 (7)
C30.0148 (8)0.0217 (9)0.0185 (10)0.0005 (7)0.0029 (7)−0.0007 (7)
C60.0158 (8)0.0188 (9)0.0194 (9)−0.0007 (7)0.0026 (7)0.0016 (7)
Cl1—C21.7387 (18)C1—C61.401 (3)
Cl2—C61.7389 (19)C4—C51.389 (3)
O1—C11.352 (2)C4—C31.391 (3)
O1—H10.85 (2)C5—H50.9500
N1—C41.426 (2)C5—C61.383 (3)
N1—H1a0.870 (5)C2—C31.386 (3)
N1—H1b0.867 (5)C3—H30.9500
C1—C21.393 (3)
H1—O1—C1113.3 (16)C6—C5—C4119.33 (17)
H1a—N1—C4112.6 (15)C6—C5—H5120.34 (11)
H1b—N1—C4110.9 (15)C1—C2—Cl1118.37 (14)
H1b—N1—H1a108 (2)C3—C2—Cl1119.15 (14)
C2—C1—O1119.75 (16)C3—C2—C1122.47 (16)
C6—C1—O1123.97 (17)C2—C3—C4119.44 (18)
C6—C1—C2116.26 (17)H3—C3—C4120.28 (11)
C5—C4—N1121.18 (17)H3—C3—C2120.28 (11)
C3—C4—N1118.87 (18)C1—C6—Cl2118.64 (14)
C3—C4—C5119.85 (17)C5—C6—Cl2118.79 (14)
H5—C5—C4120.34 (10)C5—C6—C1122.57 (17)
Cl1—C2—C3—C4−178.98 (14)C4—C5—C6—Cl2−179.43 (14)
O1—C1—C2—Cl1−0.1 (2)C4—C5—C6—C11.0 (3)
O1—C1—C2—C3−178.74 (17)C5—C4—C3—C2−1.7 (3)
O1—C1—C6—Cl2−1.1 (3)C2—C1—C6—Cl2177.57 (13)
O1—C1—C6—C5178.43 (17)C2—C1—C6—C5−2.9 (3)
N1—C4—C5—C6177.70 (17)C3—C4—C5—C61.3 (3)
N1—C4—C3—C2−178.14 (17)C6—C1—C2—Cl1−178.80 (13)
C1—C2—C3—C4−0.3 (3)C6—C1—C2—C32.5 (3)
D—H···AD—HH···AD···AD—H···A
O1—H1···N1i0.85 (2)1.82 (2)2.653 (2)168 (2)
N1—H1a···O1ii0.87 (1)2.05 (1)2.921 (2)177 (2)
Table 1

Hydrogen-bond geometry (, )

DHA DHHA D A DHA
O1H1N1i 0.85(2)1.82(2)2.653(2)168(2)
N1H1aO1ii 0.87(1)2.05(1)2.921(2)177(2)

Symmetry codes: (i) ; (ii) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Crystal structure prediction of aminols: advantages of a supramolecular synthon approach with experimental structures.

Authors:  Archan Dey; Michael T Kirchner; Venu R Vangala; Gautam R Desiraju; Raju Mondal; Judith A K Howard
Journal:  J Am Chem Soc       Date:  2005-08-03       Impact factor: 15.419

3.  Crystal structure refinement with SHELXL.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr C Struct Chem       Date:  2015-01-01       Impact factor: 1.172

4.  The anatomy of a comprehensive constrained, restrained refinement program for the modern computing environment - Olex2 dissected.

Authors:  Luc J Bourhis; Oleg V Dolomanov; Richard J Gildea; Judith A K Howard; Horst Puschmann
Journal:  Acta Crystallogr A Found Adv       Date:  2015-01-01       Impact factor: 2.290

  4 in total

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