Literature DB >> 26090180

Crystal structure of 1,2-bis-[(2-tert-butyl-phen-yl)imino]-ethane.

Alexandre C Silvino1, Juliana M Torres1.   

Abstract

The whole molecule of the title compound, C22H28N2, (I), is generated by inversion symmetry. The mol-ecule is rather similar to that of 2,3-bis-[(2-tert-butyl-phen-yl)imino]-butane, (II), a di-imine ligand comprising similar structural features [Ferreira et al. (2006 ▶). Acta Cryst. E62, o4282-o4284]. Both ligands crystallize with the -N=C(R)-C(R)=N- group around an inversion centre, in a trans configuration. Comparing the two structures, it may be noted that the independent planar groups in both mol-ecules [the central link, -N=C(R)-C(R)=N-, and the terminal aromatic ring] subtend an angle of 69.6 (1)° in (II) and 49.4 (2)° in (I). Ferreira and co-workers proposed that such angle deviation may be ascribed to the presence of two non-classical intra-molecular hydrogen bonds and steric factors. In fact, in (I), similar non-classical hydrogen bonds are observed, and the larger angular deviation in (II) may be assigned to the presence of methyl groups in the di-imino fragment, which can cause steric hindrance due to the presence of bulky tert-butyl substituents in the aromatic rings. The C=N bond lengths are similar in both compounds and agree with comonly accepted values.

Entities:  

Keywords:  DNA; crystal structure; di­imine; non-classical hydrogen bonds

Year:  2015        PMID: 26090180      PMCID: PMC4459346          DOI: 10.1107/S2056989015008610

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For general properties of di­imines, see: Rix & Brookhart (1995 ▸); Hissler et al. (2000 ▸); Ramakrishnan et al. (2011a ▸). For the inter­action of di­imine–metal complexes with DNA, see: Wang et al. (2004 ▸); Tan et al. (2008 ▸); Ramakrishnan et al. (2011b ▸). For a related structure, see: Ferreira et al. (2006 ▸).

Experimental

Crystal data

C22H28N2 M = 320.46 Monoclinic, a = 12.333 (3) Å b = 6.4740 (13) Å c = 12.519 (3) Å β = 95.22 (3)° V = 995.5 (3) Å3 Z = 2 Mo Kα radiation μ = 0.06 mm−1 T = 293 K 0.3 × 0.17 × 0.07 mm

Data collection

Nonius KappaCCD diffractometer 21498 measured reflections 1811 independent reflections 1284 reflections with I > 2σ(I) R int = 0.072

Refinement

R[F 2 > 2σ(F 2)] = 0.049 wR(F 2) = 0.119 S = 1.06 1811 reflections 109 parameters H-atom parameters constrained Δρmax = 0.13 e Å−3 Δρmin = −0.15 e Å−3

Data collection: COLLECT (Nonius, 2004 ▸); cell refinement: DIRAX/LSQ (Duisenberg, 1992 ▸); data reduction: EVALCCD (Duisenberg et al., 2003 ▸); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▸); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▸); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▸); software used to prepare material for publication: WinGX (Farrugia, 2012 ▸). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S2056989015008610/bg2548sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015008610/bg2548Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989015008610/bg2548Isup3.cml Click here for additional data file. x y z . DOI: 10.1107/S2056989015008610/bg2548fig1.tif View of (I) (50% probability displacement ellipsoids). The dashed lines indicate the proposed non-classical intra­molecular hydrogen bonds. [Symmetry code: (’) 1 − x, 1 − y, −z.] Click here for additional data file. a b . DOI: 10.1107/S2056989015008610/bg2548fig2.tif Comparison of the structures of (a) (I) and (b) (II). CCDC reference: 1062877 Additional supporting information: crystallographic information; 3D view; checkCIF report
C22H28N2F(000) = 348
Mr = 320.46Dx = 1.069 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 21498 reflections
a = 12.333 (3) Åθ = 3.6–25.4°
b = 6.4740 (13) ŵ = 0.06 mm1
c = 12.519 (3) ÅT = 293 K
β = 95.22 (3)°Plate, yellow
V = 995.5 (3) Å30.3 × 0.17 × 0.07 mm
Z = 2
Nonius KappaCCD diffractometer1284 reflections with I > 2σ(I)
Horizonally mounted graphite crystal monochromatorRint = 0.072
Detector resolution: 9 pixels mm-1θmax = 25.4°, θmin = 3.6°
CCD scansh = −14→14
21498 measured reflectionsk = −7→7
1811 independent reflectionsl = −15→15
Refinement on F20 restraints
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.049H-atom parameters constrained
wR(F2) = 0.119w = 1/[σ2(Fo2) + (0.0452P)2 + 0.2479P] where P = (Fo2 + 2Fc2)/3
S = 1.06(Δ/σ)max < 0.001
1811 reflectionsΔρmax = 0.13 e Å3
109 parametersΔρmin = −0.15 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/Ueq
N10.46712 (12)0.1526 (2)0.10801 (11)0.0485 (4)
C10.47499 (15)0.0981 (3)0.01174 (14)0.0520 (5)
H10.44860.1842−0.04420.062*
C20.41192 (14)0.3400 (3)0.12810 (12)0.0440 (4)
C30.31398 (16)0.3836 (3)0.06876 (15)0.0622 (6)
H30.28730.2920.01550.075*
C40.25541 (18)0.5595 (4)0.08691 (17)0.0736 (7)
H40.190.5870.04650.088*
C50.29551 (17)0.6930 (3)0.16573 (18)0.0694 (6)
H50.25760.81340.17830.083*
C60.39173 (16)0.6496 (3)0.22646 (15)0.0559 (5)
H60.41710.74280.27950.067*
C70.45274 (13)0.4721 (2)0.21188 (13)0.0413 (4)
C80.55778 (14)0.4249 (3)0.28333 (14)0.0476 (4)
C90.58580 (19)0.5962 (4)0.36621 (18)0.0777 (7)
H9A0.59550.72440.32980.117*
H9B0.65180.56120.4090.117*
H9C0.52760.61010.41170.117*
C100.65538 (15)0.4063 (4)0.21568 (17)0.0701 (6)
H10A0.66390.5330.17750.105*
H10B0.64290.2950.16540.105*
H10C0.72030.37910.26190.105*
C110.54410 (18)0.2230 (3)0.34482 (16)0.0684 (6)
H11A0.48340.23540.38720.103*
H11B0.60910.19590.39090.103*
H11C0.53130.11130.29480.103*
U11U22U33U12U13U23
N10.0604 (9)0.0429 (9)0.0420 (8)0.0096 (7)0.0034 (7)−0.0089 (7)
C10.0685 (12)0.0456 (10)0.0416 (10)0.0134 (9)0.0028 (8)−0.0051 (8)
C20.0546 (10)0.0405 (10)0.0380 (9)0.0103 (8)0.0092 (7)−0.0021 (7)
C30.0662 (13)0.0709 (14)0.0482 (11)0.0188 (11)−0.0016 (9)−0.0108 (10)
C40.0681 (14)0.0872 (17)0.0650 (13)0.0346 (13)0.0029 (11)0.0000 (12)
C50.0734 (14)0.0550 (13)0.0827 (15)0.0288 (11)0.0235 (12)0.0000 (11)
C60.0639 (12)0.0415 (11)0.0650 (12)0.0040 (9)0.0201 (10)−0.0096 (9)
C70.0496 (10)0.0348 (9)0.0417 (9)−0.0007 (8)0.0171 (7)−0.0024 (7)
C80.0514 (10)0.0432 (10)0.0489 (10)−0.0055 (8)0.0089 (8)−0.0081 (8)
C90.0799 (15)0.0730 (15)0.0787 (15)−0.0088 (12)−0.0013 (12)−0.0280 (12)
C100.0513 (11)0.0795 (16)0.0811 (15)0.0017 (11)0.0144 (10)−0.0068 (12)
C110.0809 (14)0.0659 (14)0.0554 (12)−0.0091 (12)−0.0105 (10)0.0094 (10)
N1—C11.268 (2)C7—C81.536 (2)
N1—C21.425 (2)C8—C91.537 (2)
C1—H10.93C9—H9A0.96
C1—C1i1.454 (3)C9—H9B0.96
C2—C31.388 (2)C9—H9C0.96
C2—C71.410 (2)C8—C101.538 (2)
C3—C41.378 (3)C10—H10A0.96
C3—H30.93C10—H10B0.96
C4—C51.370 (3)C10—H10C0.96
C5—H50.93C8—C111.534 (3)
C4—H40.93C11—H11A0.96
C5—C61.379 (3)C11—H11B0.96
C6—C71.395 (2)C11—H11C0.96
C6—H60.93
C1—N1—C2118.93 (15)C11—C8—C9107.72 (16)
N1—C1—C1i120.4 (2)C7—C8—C9112.06 (15)
N1—C1—H1119.8C11—C8—C10109.68 (16)
C1i—C1—H1119.8C7—C8—C10110.83 (14)
C3—C2—C7120.59 (16)C9—C8—C10106.81 (16)
C3—C2—N1119.03 (15)C8—C9—H9A109.5
C7—C2—N1120.24 (15)C8—C9—H9B109.5
C4—C3—C2121.56 (19)H9A—C9—H9B109.5
C4—C3—H3119.2C8—C9—H9C109.5
C2—C3—H3119.2H9A—C9—H9C109.5
C5—C4—C3118.67 (19)H9B—C9—H9C109.5
C5—C4—H4120.7C8—C10—H10A109.5
C3—C4—H4120.7C8—C10—H10B109.5
C4—C5—C6120.33 (19)H10A—C10—H10B109.5
C4—C5—H5119.8C8—C10—H10C109.5
C6—C5—H5119.8H10A—C10—H10C109.5
C5—C6—C7122.91 (18)H10B—C10—H10C109.5
C5—C6—H6118.5C8—C11—H11A109.5
C7—C6—H6118.5C8—C11—H11B109.5
C6—C7—C2115.89 (16)H11A—C11—H11B109.5
C6—C7—C8121.60 (15)C8—C11—H11C109.5
C2—C7—C8122.51 (14)H11A—C11—H11C109.5
C11—C8—C7109.64 (14)H11B—C11—H11C109.5
C2—N1—C1—C1i−176.3 (2)C3—C2—C7—C6−3.0 (2)
C1—N1—C2—C344.2 (2)N1—C2—C7—C6−178.76 (15)
C1—N1—C2—C7−139.97 (18)C3—C2—C7—C8176.94 (17)
C7—C2—C3—C42.2 (3)N1—C2—C7—C81.2 (2)
N1—C2—C3—C4178.05 (18)C6—C7—C8—C11117.87 (18)
C2—C3—C4—C5−0.1 (3)C2—C7—C8—C11−62.0 (2)
C3—C4—C5—C6−1.0 (3)C6—C7—C8—C9−1.7 (2)
C4—C5—C6—C70.1 (3)C2—C7—C8—C9178.39 (16)
C5—C6—C7—C21.9 (3)C6—C7—C8—C10−120.91 (18)
C5—C6—C7—C8−178.02 (17)C2—C7—C8—C1059.2 (2)
Table 1

Hydrogen-bond geometry (, )

-

DHADHHADADHA
C10H10BN10.9602.405(2)3.055(3)124.8(3)
C11H11CN10.9602.414(2)3.064(3)124.6(2)
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