Literature DB >> 26090144

Crystal structure of 1-[(6-chloro-pyridin-3-yl)sulfon-yl]-1,2,3,4-tetra-hydro-quinoline.

S Jeyaseelan1, H R Rajegowda2, R Britto Dominic Rayan3, P Raghavendra Kumar2, B S Palakshamurthy4.   

Abstract

The tetra-hydro-pyridine ring of the quinoline system in the title compound, C14H13ClN2O2S, adopts a half-chair conformation with the bond-angle sum at the N atom being 350.0°. The dihedral angle between the least-squares planes of the two aromatic rings is 50.13 (11)°. In the crystal, inversion dimers linked by pairs of C-H⋯O hydrogen bonds generate R 2 (2)(10) loops. Additional inter-molecular C-H⋯O hydrogen bonds generate C(7) chains along [100].

Entities:  

Keywords:  1,2,3,4-tetra­hydro­quinoline; C—H⋯O inter­actions; crystal structure; pharmaco­logical activity

Year:  2015        PMID: 26090144      PMCID: PMC4459366          DOI: 10.1107/S2056989015008099

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Chemical context

1,2,3,4-Tetra­hydro­quinoline derivatives play a vital role in developing pharmacological agents and they have been considered as potential drugs (White et al., 1994 ▸; Kokwaro & Taylor, 1990 ▸; Omura & Nakagawa, 1981 ▸) and also antagonists for N-methyl-d-aspartate (NMDA) receptors at the glycine recognition site (Cai et al., 1996 ▸). Recently, we have synthesized a series of 1,2,3,4-tetra­hydro­quinoline derivatives and a few mol­ecules in fact exhibit pharmacological activity (unpublished results). In a contin­uation of our work on the derivatives of 1,2,3,4-tetra­hydro­quinolines (Jeyaseelan et al., 2014 ▸, 2015a ▸,b ▸), we report herein the synthesis and crystal structure of 1-[(6-chloro­pyridin-3-yl)sulfon­yl]-1,2,3,4-tetra­hydro­quinoline, (I).

Structural commentary

The mol­ecular structure of compound (I) is shown in Fig. 1 ▸. The dihedral angle between the planes of the aromatic rings is 50.13 (11)°. In comparison, the dihedral angle in the 1-tosyl-1,2,3,4-tetra­hydro­quinoline, (II), is 47.74 (9)° (Jeyaseelan et al., 2014 ▸), and in 1-benzyl­sulfonyl-1,2,3,4-tetra­hydro­quinoline, (III), it is 74.15 (10)° (Jeyaseelan et al., 2015b ▸). In the structures of compounds (II), (III) and 1-methane­sulfonyl-1,2,3,4-tetra­hydro­quinoline, (IV) (Jeyaseelan et al., 2015a ▸), the tetra­hydro­pyridine (C1/C6–C9/N1) ring is in a half-chair conformation, with the methyl­ene C9 atom as the flap. However, the bond-angle sums at the N atom in (I), (II), (III) and (IV) differ somehow, with values of 350.0, 350.2, 354.61 and 347.9°, respectively.
Figure 1

The mol­ecular structure of the title compound, showing displacement ellipsoids drawn at the 50% probability level.

Supra­molecular features

In the crystal, inversion dimers linked by pairs of C11—H11⋯O2 hydrogen bonds generate (10) loops. In addition, mol­ecules are linked by C7—H7A⋯O1 hydrogen bonds, generating C(7) chains along [100], as shown in Fig. 2 ▸. Numerical values of these inter­actions are compiled in Table 1 ▸.
Figure 2

The mol­ecular packing of the title compound. Dashed lines indicate the pairs of C—H⋯O hydrogen bonds which link the mol­ecules into inversion dimers with (10) ring motifs and forming C(7) chains along [100].

Table 1

Hydrogen-bond geometry (, )

DHA DHHA D A DHA
C11H11O2i 0.932.603.309(3)134
C7H7AO1ii 0.972.663.586(5)160

Symmetry codes: (i) ; (ii) .

Synthesis and crystallization

To an ice-cold solution of 1,2,3,4-tetra­hydro­quinoline (1.332 g, 10 mmol) and tri­ethyl­amine (1.518 g, 15 mmol) in di­chloro­methane (50 ml), a solution of 6-chloro­pyridine-3-sulfonyl chloride (2.332 g, 11 mmol) in di­chloro­methane (20 ml) was added dropwise and stirred for 30 min. The reaction mixture was diluted with di­chloro­methane (150 ml), the organic layer washed with aqueous 5% NaHCO3 solution and brine, and dried over anhydrous Na2SO4. The solvent was evaporated under reduced pressure to give 1-[(6-chloro­pyridin-3-yl)sulfon­yl]-1,2,3,4-tetra­hydro­quinoline, (I). The product was recrystallized from a mixture of di­chloro­methane and n-hexane (1:1 v/v) to obtain crystals suitable for X-ray diffraction studies.

Refinement details

Crystal data, data collection and structure refinement details are summarized in Table 2 ▸. H atoms were positioned with idealized geometry using a riding-model approximation, with C—H = 0.93 Å and U iso(H) = 1.2U eq(C) for aromatic H atoms and with C—H = 0.97 Å and U iso(H) = 1.2U eq(C) for methyl­ene H atoms.
Table 2

Experimental details

Crystal data
Chemical formulaC14H13ClN2O2S
M r 308.77
Crystal system, space groupTriclinic, P
Temperature (K)296
a, b, c ()6.5661(10), 10.2595(18), 11.3490(19)
, , ()69.101(7), 88.219(7), 77.238(7)
V (3)695.6(2)
Z 2
Radiation typeMo K
(mm1)0.43
Crystal size (mm)0.23 0.18 0.16
 
Data collection
DiffractometerBruker APEXII CCD
Absorption correctionMulti-scan (SADABS; Bruker, 2013)
T min, T max 0.912, 0.934
No. of measured, independent and observed [I > 2(I)] reflections9865, 2454, 1980
R int 0.053
(sin /)max (1)0.595
 
Refinement
R[F 2 > 2(F 2)], wR(F 2), S 0.050, 0.146, 1.09
No. of reflections2454
No. of parameters181
H-atom treatmentH-atom parameters constrained
max, min (e 3)0.59, 0.43

Computer programs: APEX2 and SAINT (Bruker, 2013 ▸), SHELXS97 (Sheldrick, 2008 ▸), SHELXL2014 (Sheldrick, 2015 ▸), ORTEP-3 for Windows (Farrugia, 2012 ▸) and Mercury (Macrae et al., 2008 ▸).

Crystal structure: contains datablock(s) I, New_Global_Publ_Block. DOI: 10.1107/S2056989015008099/wm5147sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015008099/wm5147Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989015008099/wm5147Isup3.cml CCDC reference: 1061311 Additional supporting information: crystallographic information; 3D view; checkCIF report
C14H13ClN2O2SF(000) = 320
Mr = 308.77prism
Triclinic, P1Dx = 1.474 Mg m3
Hall symbol: -P 1Melting point: 413 K
a = 6.5661 (10) ÅMo Kα radiation, λ = 0.71073 Å
b = 10.2595 (18) ÅCell parameters from 1980 reflections
c = 11.3490 (19) Åθ = 1.9–25.0°
α = 69.101 (7)°µ = 0.43 mm1
β = 88.219 (7)°T = 296 K
γ = 77.238 (7)°Prism, colourless
V = 695.6 (2) Å30.23 × 0.18 × 0.16 mm
Z = 2
Bruker APEXII CCD diffractometer2454 independent reflections
Radiation source: fine-focus sealed tube1980 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.053
Detector resolution: 2.01 pixels mm-1θmax = 25.0°, θmin = 1.9°
phi and ω scansh = −7→7
Absorption correction: multi-scan (SADABS; Bruker, 2013)k = −12→12
Tmin = 0.912, Tmax = 0.934l = −13→13
9865 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.050Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.146H-atom parameters constrained
S = 1.09w = 1/[σ2(Fo2) + (0.0677P)2 + 0.3614P] where P = (Fo2 + 2Fc2)/3
2454 reflections(Δ/σ)max < 0.001
181 parametersΔρmax = 0.59 e Å3
0 restraintsΔρmin = −0.43 e Å3
0 constraints
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/Ueq
O10.3014 (3)0.1696 (3)0.3092 (2)0.0753 (7)
S0.40371 (11)0.28345 (8)0.24768 (6)0.0562 (3)
Cl11.24374 (14)0.01308 (10)0.08760 (9)0.0853 (3)
C100.6392 (4)0.2111 (3)0.1933 (2)0.0479 (6)
N10.4673 (3)0.3394 (2)0.35739 (19)0.0532 (6)
O20.3005 (3)0.4047 (2)0.14401 (19)0.0712 (6)
C110.7513 (4)0.2997 (3)0.1091 (2)0.0504 (6)
H110.69910.39830.07640.060*
N20.9018 (4)0.0058 (3)0.2047 (2)0.0657 (7)
C10.5901 (4)0.4468 (3)0.3217 (2)0.0479 (6)
C131.0055 (4)0.0935 (3)0.1264 (2)0.0545 (7)
C60.7874 (4)0.4136 (3)0.3794 (3)0.0542 (7)
C120.9387 (4)0.2403 (3)0.0750 (3)0.0545 (7)
H121.01880.29650.01900.065*
C140.7193 (5)0.0656 (3)0.2371 (3)0.0615 (8)
H140.64170.00640.29210.074*
C20.5110 (5)0.5812 (3)0.2320 (3)0.0678 (8)
H20.37600.60420.19660.081*
C50.9038 (5)0.5175 (4)0.3419 (3)0.0690 (8)
H51.03620.49750.37980.083*
C90.5138 (5)0.2322 (4)0.4875 (3)0.0733 (10)
H9A0.45440.27660.54700.088*
H9B0.44660.15420.49630.088*
C30.6339 (7)0.6804 (3)0.1957 (3)0.0812 (10)
H30.58300.76940.13350.097*
C40.8292 (6)0.6494 (4)0.2502 (3)0.0766 (10)
H40.91120.71690.22550.092*
C70.8693 (6)0.2732 (4)0.4825 (4)0.0796 (10)
H7A0.99800.22630.45630.096*
H7B0.90420.29170.55660.096*
C80.7326 (7)0.1753 (5)0.5187 (4)0.124 (2)
H8A0.77920.10370.48040.149*
H8B0.75070.12610.60950.149*
U11U22U33U12U13U23
O10.0680 (14)0.0963 (16)0.0687 (13)−0.0494 (13)0.0085 (11)−0.0202 (12)
S0.0469 (4)0.0698 (5)0.0465 (4)−0.0217 (3)−0.0027 (3)−0.0090 (3)
Cl10.0736 (6)0.0948 (7)0.0859 (6)0.0056 (5)−0.0027 (5)−0.0446 (5)
C100.0520 (15)0.0511 (15)0.0373 (12)−0.0186 (12)−0.0063 (11)−0.0069 (11)
N10.0489 (12)0.0633 (14)0.0406 (11)−0.0183 (11)0.0032 (9)−0.0072 (10)
O20.0547 (12)0.0850 (15)0.0553 (11)−0.0067 (11)−0.0148 (9)−0.0068 (11)
C110.0571 (16)0.0441 (14)0.0429 (13)−0.0133 (12)−0.0019 (12)−0.0056 (11)
N20.0813 (19)0.0509 (14)0.0591 (15)−0.0116 (13)−0.0060 (13)−0.0140 (12)
C10.0511 (15)0.0463 (14)0.0435 (13)−0.0087 (12)0.0095 (11)−0.0146 (11)
C130.0566 (16)0.0595 (17)0.0472 (14)−0.0088 (13)−0.0096 (12)−0.0203 (13)
C60.0566 (16)0.0517 (16)0.0551 (15)−0.0155 (13)0.0029 (13)−0.0184 (13)
C120.0561 (16)0.0596 (17)0.0482 (14)−0.0218 (14)0.0053 (12)−0.0149 (13)
C140.078 (2)0.0509 (17)0.0508 (15)−0.0255 (16)0.0011 (14)−0.0056 (13)
C20.0673 (19)0.0558 (18)0.0628 (18)−0.0001 (15)0.0048 (15)−0.0088 (14)
C50.070 (2)0.070 (2)0.077 (2)−0.0312 (17)0.0105 (16)−0.0290 (17)
C90.079 (2)0.093 (2)0.0399 (15)−0.0443 (19)0.0005 (14)−0.0004 (15)
C30.105 (3)0.0411 (16)0.081 (2)−0.0057 (18)0.025 (2)−0.0101 (15)
C40.098 (3)0.060 (2)0.084 (2)−0.0356 (19)0.033 (2)−0.0315 (18)
C70.066 (2)0.068 (2)0.086 (2)−0.0170 (17)−0.0195 (17)−0.0029 (17)
C80.110 (3)0.118 (3)0.089 (3)−0.050 (3)−0.042 (3)0.047 (3)
O1—S1.428 (2)C6—C51.385 (4)
S—O21.423 (2)C6—C71.492 (4)
S—O11.428 (2)C12—H120.9300
S—N11.644 (2)C14—H140.9300
S—C101.756 (3)C2—C31.378 (5)
Cl1—C131.723 (3)C2—H20.9300
C10—C141.376 (4)C5—C41.374 (5)
C10—C111.383 (3)C5—H50.9300
N1—C11.443 (3)C9—C81.430 (5)
N1—C91.484 (3)C9—H9A0.9700
C11—C121.358 (4)C9—H9B0.9700
C11—H110.9300C3—C41.362 (5)
N2—C131.314 (4)C3—H30.9300
N2—C141.325 (4)C4—H40.9300
C1—C21.386 (4)C7—C81.437 (5)
C1—C61.387 (4)C7—H7A0.9700
C13—C121.378 (4)C8—H8A0.9700
O2—S—O1120.12 (13)C3—C2—C1119.5 (3)
O2—S—N1108.30 (13)C3—C2—H2120.2
O1—S—N1106.51 (12)C1—C2—H2120.2
O2—S—C10106.62 (12)C4—C5—C6121.9 (3)
O1—S—C10107.97 (14)C4—C5—H5119.1
N1—S—C10106.63 (12)C6—C5—H5119.1
C14—C10—C11118.8 (3)C8—C9—N1113.3 (3)
C14—C10—S120.6 (2)C8—C9—H9A108.9
C11—C10—S120.6 (2)N1—C9—H9A108.9
C1—N1—C9115.2 (2)C8—C9—H9B108.9
C1—N1—S117.64 (16)N1—C9—H9B108.9
C9—N1—S117.2 (2)H9A—C9—H9B107.7
C12—C11—C10118.9 (3)C4—C3—C2120.7 (3)
C12—C11—H11120.6C4—C3—H3119.6
C10—C11—H11120.6C2—C3—H3119.6
C13—N2—C14116.3 (2)C3—C4—C5119.4 (3)
C2—C1—C6120.7 (3)C3—C4—H4120.3
C2—C1—N1120.4 (3)C5—C4—H4120.3
C6—C1—N1118.8 (2)C8—C7—C6116.5 (3)
N2—C13—C12125.4 (3)C8—C7—H7A108.2
N2—C13—Cl1115.3 (2)C6—C7—H7A108.2
C12—C13—Cl1119.2 (2)C8—C7—H7B108.2
C5—C6—C1117.8 (3)C6—C7—H7B108.2
C5—C6—C7120.7 (3)H7A—C7—H7B107.3
C1—C6—C7121.5 (2)C9—C8—C7118.0 (4)
C11—C12—C13117.4 (3)C9—C8—H8A107.8
C11—C12—H12121.3C7—C8—H8A107.8
C13—C12—H12121.3C9—C8—H8B107.8
N2—C14—C10123.1 (3)C7—C8—H8B107.8
N2—C14—H14118.4H8A—C8—H8B107.1
C10—C14—H14118.4
O2—S—C10—C14−145.4 (2)C9—N1—C1—C627.0 (4)
O2—S—C10—C14−145.4 (2)S—N1—C1—C6−117.9 (2)
O1—S—C10—C14−15.0 (3)C14—N2—C13—C12−1.0 (4)
O1—S—C10—C14−15.0 (3)C14—N2—C13—Cl1179.2 (2)
O1—S—C10—C14−15.0 (3)C2—C1—C6—C5−1.8 (4)
N1—S—C10—C1499.1 (2)N1—C1—C6—C5178.8 (2)
O2—S—C10—C1137.0 (2)C2—C1—C6—C7175.7 (3)
O2—S—C10—C1137.0 (2)N1—C1—C6—C7−3.7 (4)
O1—S—C10—C11167.3 (2)C10—C11—C12—C130.4 (4)
O1—S—C10—C11167.3 (2)N2—C13—C12—C110.9 (4)
O1—S—C10—C11167.3 (2)Cl1—C13—C12—C11−179.2 (2)
N1—S—C10—C11−78.6 (2)C13—N2—C14—C10−0.3 (4)
O2—S—N1—C1−54.9 (2)C11—C10—C14—N21.5 (4)
O2—S—N1—C1−54.9 (2)S—C10—C14—N2−176.1 (2)
O1—S—N1—C1174.7 (2)C6—C1—C2—C33.1 (4)
O1—S—N1—C1174.7 (2)N1—C1—C2—C3−177.6 (3)
O1—S—N1—C1174.7 (2)C1—C6—C5—C4−0.3 (5)
C10—S—N1—C159.5 (2)C7—C6—C5—C4−177.8 (3)
O2—S—N1—C9161.0 (2)C1—N1—C9—C8−46.6 (5)
O2—S—N1—C9161.0 (2)S—N1—C9—C898.4 (4)
O1—S—N1—C930.5 (2)C1—C2—C3—C4−2.3 (5)
O1—S—N1—C930.5 (2)C2—C3—C4—C50.2 (5)
O1—S—N1—C930.5 (2)C6—C5—C4—C31.1 (5)
C10—S—N1—C9−84.6 (2)C5—C6—C7—C8177.1 (4)
C14—C10—C11—C12−1.6 (4)C1—C6—C7—C8−0.3 (6)
S—C10—C11—C12176.12 (19)N1—C9—C8—C743.5 (6)
C9—N1—C1—C2−152.4 (3)C6—C7—C8—C9−20.5 (7)
S—N1—C1—C262.8 (3)
D—H···AD—HH···AD···AD—H···A
C11—H11···O2i0.932.603.309 (3)134
C7—H7A···O1ii0.972.663.586 (5)160
  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Synthesis and structure-activity relationships of 1,2,3,4-tetrahydroquinoline-2,3,4-trione 3-oximes: novel and highly potent antagonists for NMDA receptor glycine site.

Authors:  S X Cai; Z L Zhou; J C Huang; E R Whittemore; Z O Egbuwoku; Y Lü; J E Hawkinson; R M Woodward; E Weber; J F Keana
Journal:  J Med Chem       Date:  1996-08-16       Impact factor: 7.446

3.  Partitioning of oxaminiquine into brain tissue following intravenous administration to female Wistar rats.

Authors:  G O Kokwaro; G Taylor
Journal:  Drug Chem Toxicol       Date:  1990       Impact factor: 3.356

4.  Crystal structure refinement with SHELXL.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr C Struct Chem       Date:  2015-01-01       Impact factor: 1.172

5.  Crystal structure of 1-tosyl-1,2,3,4-tetra-hydro-quinoline.

Authors:  S Jeyaseelan; K V Asha; G Venkateshappa; P Raghavendrakumar; B S Palakshamurthy
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-10-24
  5 in total

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