Literature DB >> 26089126

Atomic decomposition of conceptual DFT descriptors: application to proton transfer reactions.

Ricardo Inostroza-Rivera1, Meziane Yahia-Ouahmed, Vincent Tognetti, Laurent Joubert, Bárbara Herrera, Alejandro Toro-Labbé.   

Abstract

In this study, we present an atomic decomposition, in principle exact, at any point on a given reaction path, of the molecular energy, reaction force and reaction flux, which is based on Bader's atoms-in-molecules theory and on Pendás' interacting quantum atoms scheme. This decomposition enables the assessment of the importance and the contribution of each atom or molecular group to these global properties, and may cast the light on the physical factors governing bond formation or bond breaking. The potential use of this partition is finally illustrated by proton transfers in model biological systems.

Year:  2015        PMID: 26089126     DOI: 10.1039/c5cp01515d

Source DB:  PubMed          Journal:  Phys Chem Chem Phys        ISSN: 1463-9076            Impact factor:   3.676


  7 in total

1.  Can molecular and atomic descriptors predict the electrophilicity of Michael acceptors?

Authors:  Guillaume Hoffmann; Vincent Tognetti; Laurent Joubert
Journal:  J Mol Model       Date:  2018-09-14       Impact factor: 1.810

2.  Unfavorable regions in the ramachandran plot: Is it really steric hindrance? The interacting quantum atoms perspective.

Authors:  Peter I Maxwell; Paul L A Popelier
Journal:  J Comput Chem       Date:  2017-08-25       Impact factor: 3.376

3.  An interacting quantum atom study of model SN 2 reactions (X- ···CH3 X, X = F, Cl, Br, and I).

Authors:  Ibon Alkorta; Joseph C R Thacker; Paul L A Popelier
Journal:  J Comput Chem       Date:  2017-11-10       Impact factor: 3.376

4.  Novel pathway for mutagenic tautomerization of classical А∙Т DNA base pairs via sequential proton transfer through quasi-orthogonal transition states: A QM/QTAIM investigation.

Authors:  Ol'ha O Brovarets'; Kostiantyn S Tsiupa; Dmytro M Hovorun
Journal:  PLoS One       Date:  2018-06-27       Impact factor: 3.240

5.  Using the Relative Energy Gradient Method with Interacting Quantum Atoms to Determine the Reaction Mechanism and Catalytic Effects in the Peptide Hydrolysis in HIV-1 Protease.

Authors:  Joseph C R Thacker; Mark A Vincent; Paul L A Popelier
Journal:  Chemistry       Date:  2018-07-03       Impact factor: 5.236

6.  Does the Intra-Atomic Deformation Energy of Interacting Quantum Atoms Represent Steric Energy?

Authors:  Benjamin C B Symons; Dominic J Williamson; Campbell M Brooks; Alex L Wilson; Paul L A Popelier
Journal:  ChemistryOpen       Date:  2019-02-08       Impact factor: 2.911

7.  The ANANKE relative energy gradient (REG) method to automate IQA analysis over configurational change.

Authors:  Joseph C R Thacker; Paul L A Popelier
Journal:  Theor Chem Acc       Date:  2017-07-05       Impact factor: 1.702

  7 in total

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