Literature DB >> 26088836

Electrochemical Resolution of the [4Fe-4S] Centers of the AdoMet Radical Enzyme BtrN: Evidence of Proton Coupling and an Unusual, Low-Potential Auxiliary Cluster.

Stephanie J Maiocco1, Tyler L Grove, Squire J Booker, Sean J Elliott1.   

Abstract

The S-adenosylmethionine (AdoMet) radical superfamily of enzymes includes over 113,500 unique members, each of which contains one indispensable iron-sulfur (FeS) cluster that is required to generate a 5'-deoxyadenosyl 5'-radical intermediate during catalysis. Enzymes within several subgroups of the superfamily, however, have been found to contain one or more additional FeS clusters. While these additional clusters are absolutely essential for enzyme activity, their exact roles in the function and/or mechanism of action of many of the enzymes are at best speculative, indicating a need to develop methods to characterize and study these clusters in more detail. Here, BtrN, an AdoMet radical dehydrogenase that catalyzes the two-electron oxidation of 2-deoxy-scyllo-inosamine to amino-dideoxy-scyllo-inosose, an intermediate in the biosynthesis of 2-deoxystreptamine antibiotics, is examined through direct electrochemistry, where the potential of both its AdoMet radical and auxiliary [4Fe-4S] clusters can be measured simultaneously. We find that the AdoMet radical cluster exhibits a midpoint potential of -510 mV, while the auxiliary cluster exhibits a midpoint potential of -765 mV, to our knowledge the lowest [4Fe-4S](2+/+) potential to be determined to date. The impact of AdoMet binding and the pH dependence of catalysis are also quantitatively observed. These data show that direct electrochemical methods can be used to further elucidate the chemistry of the burgeoning AdoMet radical superfamily in the future.

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Year:  2015        PMID: 26088836     DOI: 10.1021/jacs.5b03384

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  17 in total

1.  Redox Chemistry in the Genome: Emergence of the [4Fe4S] Cofactor in Repair and Replication.

Authors:  Jacqueline K Barton; Rebekah M B Silva; Elizabeth O'Brien
Journal:  Annu Rev Biochem       Date:  2019-06-20       Impact factor: 23.643

2.  Parsing redox potentials of five ferredoxins found within Thermotoga maritima.

Authors:  Stephanie J Maiocco; Arthur J Arcinas; Squire J Booker; Sean J Elliott
Journal:  Protein Sci       Date:  2019-01       Impact factor: 6.725

3.  Structural Properties and Catalytic Implications of the SPASM Domain Iron-Sulfur Clusters in Methylorubrum extorquens PqqE.

Authors:  Wen Zhu; Lindsey M Walker; Lizhi Tao; Anthony T Iavarone; Xuetong Wei; R David Britt; Sean J Elliott; Judith P Klinman
Journal:  J Am Chem Soc       Date:  2020-07-09       Impact factor: 15.419

4.  Mechanism of Rate Acceleration of Radical C-C Bond Formation Reaction by a Radical SAM GTP 3',8-Cyclase.

Authors:  Haoran Pang; Edward A Lilla; Pan Zhang; Du Zhang; Thomas P Shields; Lincoln G Scott; Weitao Yang; Kenichi Yokoyama
Journal:  J Am Chem Soc       Date:  2020-05-11       Impact factor: 15.419

Review 5.  At the confluence of ribosomally synthesized peptide modification and radical S-adenosylmethionine (SAM) enzymology.

Authors:  John A Latham; Ian Barr; Judith P Klinman
Journal:  J Biol Chem       Date:  2017-08-22       Impact factor: 5.157

6.  The Elusive 5'-Deoxyadenosyl Radical: Captured and Characterized by Electron Paramagnetic Resonance and Electron Nuclear Double Resonance Spectroscopies.

Authors:  Hao Yang; Elizabeth C McDaniel; Stella Impano; Amanda S Byer; Richard J Jodts; Kenichi Yokoyama; William E Broderick; Joan B Broderick; Brian M Hoffman
Journal:  J Am Chem Soc       Date:  2019-07-22       Impact factor: 15.419

7.  Analysis of RNA Methylation by Phylogenetically Diverse Cfr Radical S-Adenosylmethionine Enzymes Reveals an Iron-Binding Accessory Domain in a Clostridial Enzyme.

Authors:  James D Gumkowski; Ryan J Martinie; Patrick S Corrigan; Juan Pan; Matthew R Bauerle; Mohamed Almarei; Squire J Booker; Alexey Silakov; Carsten Krebs; Amie K Boal
Journal:  Biochemistry       Date:  2019-07-12       Impact factor: 3.162

Review 8.  Biogenesis of the peptide-derived redox cofactor pyrroloquinoline quinone.

Authors:  Wen Zhu; Judith P Klinman
Journal:  Curr Opin Chem Biol       Date:  2020-07-27       Impact factor: 8.822

9.  Photoinduced Electron Transfer in a Radical SAM Enzyme Generates an S-Adenosylmethionine Derived Methyl Radical.

Authors:  Hao Yang; Stella Impano; Eric M Shepard; Christopher D James; William E Broderick; Joan B Broderick; Brian M Hoffman
Journal:  J Am Chem Soc       Date:  2019-09-26       Impact factor: 15.419

Review 10.  C-C bond forming radical SAM enzymes involved in the construction of carbon skeletons of cofactors and natural products.

Authors:  Kenichi Yokoyama; Edward A Lilla
Journal:  Nat Prod Rep       Date:  2018-07-18       Impact factor: 13.423

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