Literature DB >> 26086524

Correction: The Aspartate-Less Receiver (ALR) Domains: Distribution, Structure and Function.

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Abstract

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Year:  2015        PMID: 26086524      PMCID: PMC4472841          DOI: 10.1371/journal.ppat.1004951

Source DB:  PubMed          Journal:  PLoS Pathog        ISSN: 1553-7366            Impact factor:   6.823


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There is an error in Fig 2 that was introduced by the publisher. Specifically, Fig 2 in the published article contains a part C, which was moved to the Supporting Information files during production of the article. Part C is included as Figure S7. The publisher apologizes for this error.
Fig 2

Cys-ALRs.

(a) Alignment of the 26 extracted ALR domains that contain a cysteine residue in place of the typical phosphorylated Asp seen in canonical REC domain sequences (colored yellow). For comparison, Asp-containing REC domains VanR, OmpR, PhoB, CiaR and CovR were included and their conserved phosphorylatable Asp residue (colored blue). The ALR sequences were imported in FASTA format into Clustal X 2.1 [82]. The alignment was then uploaded into MacBoxShade 2.15 (Institute of Animal Health, Pirbright, UK) for visual representation. (b) Phylogenetic tree of Cys-ALRs shown in (a). Related clades are grouped by color and a schematic representation of their domain architecture is shown on the right. Posterior probabilities are shown at the branch points. The circle with a “C” or “D” indicates a Cys or Asp amino acid, respectively, located at the phospho-Asp position. Domain architecture abbreviations are as follows: REC, receiver; HK, histidine kinase; HTH, helix-turn-helix; wHTH, winged helix-turn-helix; DsbA, bacterial disulfide oxidoreductase; GGDEF, cyclic-di-GMP; EAL, diguanylate phosphodiesterase; HDOD and HD5, phosphohydrolase; HTH-luxR, luxR family of bacterial transcription factors; MYSc, myocin domain; DUF, domain of unknown function. The alignment was generated using Clustal X 2.1 [82] and uploaded for phylogenetic display into Archaeopteryx [83].

Please see the correct version of Fig 2 here. The figure legend is unchanged.

Cys-ALRs.

(a) Alignment of the 26 extracted ALR domains that contain a cysteine residue in place of the typical phosphorylated Asp seen in canonical REC domain sequences (colored yellow). For comparison, Asp-containing REC domains VanR, OmpR, PhoB, CiaR and CovR were included and their conserved phosphorylatable Asp residue (colored blue). The ALR sequences were imported in FASTA format into Clustal X 2.1 [82]. The alignment was then uploaded into MacBoxShade 2.15 (Institute of Animal Health, Pirbright, UK) for visual representation. (b) Phylogenetic tree of Cys-ALRs shown in (a). Related clades are grouped by color and a schematic representation of their domain architecture is shown on the right. Posterior probabilities are shown at the branch points. The circle with a “C” or “D” indicates a Cys or Asp amino acid, respectively, located at the phospho-Asp position. Domain architecture abbreviations are as follows: REC, receiver; HK, histidine kinase; HTH, helix-turn-helix; wHTH, winged helix-turn-helix; DsbA, bacterial disulfide oxidoreductase; GGDEF, cyclic-di-GMP; EAL, diguanylate phosphodiesterase; HDOD and HD5, phosphohydrolase; HTH-luxR, luxR family of bacterial transcription factors; MYSc, myocin domain; DUF, domain of unknown function. The alignment was generated using Clustal X 2.1 [82] and uploaded for phylogenetic display into Archaeopteryx [83].
  1 in total

1.  The aspartate-less receiver (ALR) domains: distribution, structure and function.

Authors:  Andrew F Maule; David P Wright; Joshua J Weiner; Lanlan Han; Francis C Peterson; Brian F Volkman; Nicholas R Silvaggi; Andrew T Ulijasz
Journal:  PLoS Pathog       Date:  2015-04-13       Impact factor: 6.823

  1 in total

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